HL_5UYP_109
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGUUGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5UYP|1|Y|U|16, 5UYP|1|Y|U|17, 5UYP|1|Y|G|18, 5UYP|1|Y|G|19, 5UYP|1|Y|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYP_109 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.2434
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
5UYP|1|Y|C|13
5UYP|1|Y|A|14
5UYP|1|Y|G|15
5UYP|1|Y|U|16
5UYP|1|Y|U|17
5UYP|1|Y|G|18
5UYP|1|Y|G|19
5UYP|1|Y|U|20
5UYP|1|Y|A|21
5UYP|1|Y|G|22
Current chains
- Chain Y
- tRNALys
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 08
- 50S ribosomal protein L6
- Chain L
- 30S ribosomal protein S12
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