3D structure

PDB id
5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
5UYQ|1|01|A|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5UYQ_003 not in the Motif Atlas
Homologous match to HL_5J7L_136
Geometric discrepancy: 0.1259
The information below is about HL_5J7L_136
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82710.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

5UYQ|1|01|G|123
5UYQ|1|01|G|124
5UYQ|1|01|A|125
5UYQ|1|01|A|126
5UYQ|1|01|A|127
5UYQ|1|01|C|128

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 22
50S ribosomal protein L23
Chain 32
50S ribosomal protein L34

Coloring options:


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