HL_5UYQ_006

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5UYQ|1|01|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_006 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1171

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5UYQ|1|01|G|194
5UYQ|1|01|A|195
5UYQ|1|01|A|196
5UYQ|1|01|A|197
5UYQ|1|01|C|198
5UYQ|1|01|A|199
5UYQ|1|01|U|200
5UYQ|1|01|C|201

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L15

Chain 26

50S ribosomal protein L28

Chain X

Transfer RNA; tRNA