HL_5UYQ_010

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5UYQ|1|01|G|329, 5UYQ|1|01|A|330, 5UYQ|1|01|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1501

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5UYQ|1|01|G|327
5UYQ|1|01|U|328
5UYQ|1|01|G|329
5UYQ|1|01|A|330
5UYQ|1|01|C|331
5UYQ|1|01|A|332
5UYQ|1|01|G|333
5UYQ|1|01|C|334
5UYQ|1|01|C|335

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 23

50S ribosomal protein L24