HL_5UYQ_031
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYQ_031 not in the Motif Atlas
- Homologous match to HL_5J7L_165
- Geometric discrepancy: 0.1617
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
5UYQ|1|01|G|1281
5UYQ|1|01|U|1282
5UYQ|1|01|G|1283
5UYQ|1|01|A|1284
5UYQ|1|01|A|1285
5UYQ|1|01|A|1286
5UYQ|1|01|A|1287
5UYQ|1|01|G|1288
5UYQ|1|01|C|1289
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 50S ribosomal protein L17
- Chain 21
- 50S ribosomal protein L22
- Chain 30
- 50S ribosomal protein L32
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