HL_5UYQ_042

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

5UYQ|1|01|U|1729, 5UYQ|1|01|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_042 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.2884

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

5UYQ|1|01|C|1727
5UYQ|1|01|C|1728
5UYQ|1|01|U|1729
5UYQ|1|01|C|1730
5UYQ|1|01|G|1731
5UYQ|1|01|C|1732
5UYQ|1|01|G|1733

Current chains

Chain 01

23S ribosomal RNA

Nearby chains