HL_5UYQ_047

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5UYQ|1|01|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_047 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.3556

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5UYQ|1|01|G|1910
5UYQ|1|01|U|1911
5UYQ|1|01|A|1912
5UYQ|1|01|A|1913
5UYQ|1|01|C|1914
5UYQ|1|01|U|1915
5UYQ|1|01|A|1916
5UYQ|1|01|U|1917
5UYQ|1|01|A|1918
5UYQ|1|01|A|1919
5UYQ|1|01|C|1920

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain V

mRNA

Chain W

Transfer RNA; tRNA

Chain Y

Transfer RNA; tRNA