HL_5UYQ_070

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

5UYQ|1|02|U|87, 5UYQ|1|02|U|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_070 not in the Motif Atlas

Homologous match to HL_5J7L_204

Geometric discrepancy: 0.2077

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5UYQ|1|02|G|86
5UYQ|1|02|U|87
5UYQ|1|02|C|88
5UYQ|1|02|U|89
5UYQ|1|02|C|90

Current chains

Chain 02

5S ribosomal RNA

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain 15

50S ribosomal protein L16