3D structure

PDB id
5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5UYQ_085 not in the Motif Atlas
Homologous match to HL_6CZR_086
Geometric discrepancy: 0.1593
The information below is about HL_6CZR_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.4
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
13

Unit IDs

5UYQ|1|A|C|689
5UYQ|1|A|G|690
5UYQ|1|A|G|691
5UYQ|1|A|U|692
5UYQ|1|A|G|693
5UYQ|1|A|A|694
5UYQ|1|A|A|695
5UYQ|1|A|A|696
5UYQ|1|A|U|697
5UYQ|1|A|G|698

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 01
Large subunit ribosomal RNA; LSU rRNA
Chain G
30S ribosomal protein S7
Chain K
30S ribosomal protein S11
Chain U
30S ribosomal protein S21
Chain V
mRNA
Chain X
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5394 s