HL_5UYQ_088

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5UYQ|1|A|U|842, 5UYQ|1|A|G|844, 5UYQ|1|A|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_088 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3355

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5UYQ|1|A|C|840
5UYQ|1|A|C|841
5UYQ|1|A|U|842
5UYQ|1|A|U|843
5UYQ|1|A|G|844
5UYQ|1|A|A|845
5UYQ|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S18