HL_5UYQ_106

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

5UYQ|1|X|C|16, 5UYQ|1|X|G|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_106 not in the Motif Atlas

Homologous match to HL_6GSL_208

Geometric discrepancy: 0.2273

The information below is about HL_6GSL_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UYQ|1|X|C|13
5UYQ|1|X|A|14
5UYQ|1|X|G|15
5UYQ|1|X|C|16
5UYQ|1|X|C|17
5UYQ|1|X|U|17|||A
5UYQ|1|X|G|18
5UYQ|1|X|G|19
5UYQ|1|X|U|20
5UYQ|1|X|A|21
5UYQ|1|X|G|22

Current chains

Chain X

tRNAfMet

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain 03

50S ribosomal protein L1