HL_5UZ4_008

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UZ4_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.188

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5UZ4|1|A|A|320
5UZ4|1|A|A|321
5UZ4|1|A|C|322
5UZ4|1|A|U|323
5UZ4|1|A|G|324
5UZ4|1|A|A|325
5UZ4|1|A|G|326
5UZ4|1|A|A|327
5UZ4|1|A|C|328
5UZ4|1|A|A|329
5UZ4|1|A|C|330
5UZ4|1|A|G|331
5UZ4|1|A|G|332
5UZ4|1|A|U|333

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20