5UZ4 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5UZ4_033 | No text annotation | ||
| HL_5UZ4_001 | No text annotation | ||
| HL_5UZ4_002 | No text annotation | ||
| HL_5UZ4_003 | GNRA | ||
| HL_5UZ4_004 | GNRA | ||
| HL_5UZ4_005 | UNCG | ||
| HL_5UZ4_006 | GNRA related | ||
| HL_5UZ4_034 | GNRA with extra near cWW | ||
| HL_5UZ4_007 | GNRA | ||
| HL_5UZ4_008 | No text annotation | ||
| HL_5UZ4_009 | UNCG | ||
| HL_5UZ4_010 | GNRA | ||
| HL_5UZ4_011 | UNCG | ||
| HL_5UZ4_012 | No text annotation | ||
| HL_5UZ4_035 | No text annotation | ||
| HL_5UZ4_013 | GNRA | ||
| HL_5UZ4_014 | GNRA-like with tWH | ||
| HL_5UZ4_036 | No text annotation | ||
| HL_5UZ4_015 | No text annotation | ||
| HL_5UZ4_016 | GNRA | ||
| HL_5UZ4_017 | No text annotation | ||
| HL_5UZ4_018 | No text annotation | ||
| HL_5UZ4_019 | GNRA | ||
| HL_5UZ4_020 | GNRA | ||
| HL_5UZ4_021 | No text annotation | ||
| HL_5UZ4_037 | No text annotation | ||
| HL_5UZ4_022 | GNRA | ||
| HL_5UZ4_023 | Mini UNCG | ||
| HL_5UZ4_024 | GNRA with extra cWW | ||
| HL_5UZ4_038 | GNRA | ||
| HL_5UZ4_025 | T-loop related | ||
| HL_5UZ4_026 | No text annotation | ||
| HL_5UZ4_027 | GNRA | ||
| HL_5UZ4_039 | No text annotation | ||
| HL_5UZ4_028 | GNRA | ||
| HL_5UZ4_029 | No text annotation | ||
| HL_5UZ4_040 | No text annotation | ||
| HL_5UZ4_043 | T-loop with 3 stacked bulged bases | ||
| HL_5UZ4_041 | No text annotation | ||
| HL_5UZ4_030 | No text annotation | ||
| HL_5UZ4_044 | No text annotation | ||
| HL_5UZ4_031 | UNCG | ||
| HL_5UZ4_042 | No text annotation | ||
| HL_5UZ4_032 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5UZ4_038 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5UZ4_001 | Tandem non-canonical cWW pairs | ||
| IL_5UZ4_064 | Single bulged G | ||
| IL_5UZ4_065 | Partly complementary | ||
| IL_5UZ4_002 | Isolated non-canonical cWW pair | ||
| IL_5UZ4_003 | No text annotation | ||
| IL_5UZ4_004 | No text annotation | ||
| IL_5UZ4_005 | Minor groove platform with extra cWW | ||
| IL_5UZ4_006 | Minor groove platform | ||
| IL_5UZ4_066 | No text annotation | ||
| IL_5UZ4_067 | No text annotation | ||
| IL_5UZ4_007 | Single bulged G | ||
| IL_5UZ4_068 | Tandem non-canonical cWW pairs | ||
| IL_5UZ4_008 | Isolated non-canonical cWW pair | ||
| IL_5UZ4_009 | Minor groove platform related | ||
| IL_5UZ4_010 | Isolated cWH basepair | ||
| IL_5UZ4_011 | tWH-tWH-tHW-tHW | ||
| IL_5UZ4_012 | Minor groove platform | ||
| IL_5UZ4_013 | Kink-turn with non-sequential stacking | ||
| IL_5UZ4_069 | No text annotation | ||
| IL_5UZ4_014 | No text annotation | ||
| IL_5UZ4_015 | C-loop | ||
| IL_5UZ4_016 | Single bulged U | ||
| IL_5UZ4_017 | C-loop | ||
| IL_5UZ4_070 | No text annotation | ||
| IL_5UZ4_018 | Tandem non-canonical cWW pairs | ||
| IL_5UZ4_019 | No text annotation | ||
| IL_5UZ4_020 | No text annotation | ||
| IL_5UZ4_071 | No text annotation | ||
| IL_5UZ4_072 | No text annotation | ||
| IL_5UZ4_021 | tSH-tHW-tWW | ||
| IL_5UZ4_022 | No text annotation | ||
| IL_5UZ4_073 | No text annotation | ||
| IL_5UZ4_023 | Single stack bend | ||
| IL_5UZ4_024 | SSU/LSU pseudoknot | ||
| IL_5UZ4_074 | No text annotation | ||
| IL_5UZ4_025 | Kink-turn related | ||
| IL_5UZ4_026 | No text annotation | ||
| IL_5UZ4_027 | tSH-tHW-tHS | ||
| IL_5UZ4_028 | Major groove platform | ||
| IL_5UZ4_029 | Major groove minor groove platform; mini C-loop | ||
| IL_5UZ4_030 | No text annotation | ||
| IL_5UZ4_031 | Major groove platform; stack outside cWW | ||
| IL_5UZ4_075 | No text annotation | ||
| IL_5UZ4_032 | Single stack bend | ||
| IL_5UZ4_033 | Tandem non-canonical cWW pairs | ||
| IL_5UZ4_034 | No text annotation | ||
| IL_5UZ4_035 | No text annotation | ||
| IL_5UZ4_036 | Left turn | ||
| IL_5UZ4_076 | No text annotation | ||
| IL_5UZ4_037 | tSH-tHW-tHS | ||
| IL_5UZ4_077 | Isolated non-canonical cWW pair | ||
| IL_5UZ4_039 | Single bulged A | ||
| IL_5UZ4_040 | Single bulged G | ||
| IL_5UZ4_078 | No text annotation | ||
| IL_5UZ4_041 | Minor groove platform | ||
| IL_5UZ4_079 | No text annotation | ||
| IL_5UZ4_042 | Isolated non-canonical cWW with bulges | ||
| IL_5UZ4_043 | Minor groove platform | ||
| IL_5UZ4_080 | No text annotation | ||
| IL_5UZ4_044 | No text annotation | ||
| IL_5UZ4_091 | No text annotation | ||
| IL_5UZ4_045 | Single bulged U | ||
| IL_5UZ4_046 | Isolated cWS basepair | ||
| IL_5UZ4_081 | No text annotation | ||
| IL_5UZ4_082 | Minor groove platform with extra cWW | ||
| IL_5UZ4_047 | Minor groove platform | ||
| IL_5UZ4_048 | Single bulged A | ||
| IL_5UZ4_049 | Isolated non-canonical cWW pair | ||
| IL_5UZ4_083 | No text annotation | ||
| IL_5UZ4_092 | No text annotation | ||
| IL_5UZ4_050 | No text annotation | ||
| IL_5UZ4_051 | Minor groove platform | ||
| IL_5UZ4_084 | No text annotation | ||
| IL_5UZ4_052 | No text annotation | ||
| IL_5UZ4_053 | No text annotation | ||
| IL_5UZ4_085 | No text annotation | ||
| IL_5UZ4_054 | 180 degree turn | ||
| IL_5UZ4_055 | No text annotation | ||
| IL_5UZ4_086 | No text annotation | ||
| IL_5UZ4_056 | No text annotation | ||
| IL_5UZ4_087 | Isolated non-canonical cWW pair | ||
| IL_5UZ4_057 | No text annotation | ||
| IL_5UZ4_058 | No text annotation | ||
| IL_5UZ4_093 | No text annotation | ||
| IL_5UZ4_088 | No text annotation | ||
| IL_5UZ4_059 | No text annotation | ||
| IL_5UZ4_060 | No text annotation | ||
| IL_5UZ4_094 | No text annotation | ||
| IL_5UZ4_089 | No text annotation | ||
| IL_5UZ4_095 | Isolated non-canonical cWW pair | ||
| IL_5UZ4_061 | No text annotation | ||
| IL_5UZ4_090 | No text annotation | ||
| IL_5UZ4_062 | Major groove platform with extra cWW | ||
| IL_5UZ4_096 | No text annotation | ||
| IL_5UZ4_063 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_5UZ4_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_5J7L_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5UZ4_001 | No text annotation | ||
| J3_5UZ4_002 | No text annotation | ||
| J3_5UZ4_013 | No text annotation | ||
| J3_5UZ4_003 | No text annotation | ||
| J3_5UZ4_014 | No text annotation | ||
| J3_5UZ4_004 | No text annotation | ||
| J3_5UZ4_015 | No text annotation | ||
| J3_5UZ4_016 | No text annotation | ||
| J3_5UZ4_005 | No text annotation | ||
| J3_5UZ4_006 | No text annotation | ||
| J3_5UZ4_007 | No text annotation | ||
| J3_5UZ4_017 | No text annotation | ||
| J3_5UZ4_018 | No text annotation | ||
| J3_5UZ4_008 | No text annotation | ||
| J3_5UZ4_009 | No text annotation | ||
| J3_5UZ4_010 | No text annotation | ||
| J3_5UZ4_023 | No text annotation | ||
| J3_5UZ4_019 | No text annotation | ||
| J3_5UZ4_011 | No text annotation | ||
| J3_5UZ4_020 | No text annotation | ||
| J3_5UZ4_021 | No text annotation | ||
| J3_5UZ4_024 | No text annotation | ||
| J3_5UZ4_025 | No text annotation | ||
| J3_5UZ4_012 | No text annotation | ||
| J3_5UZ4_022 | No text annotation | ||
| J4_5UZ4_004 | No text annotation | ||
| J4_5UZ4_001 | No text annotation | ||
| J4_5UZ4_002 | No text annotation | ||
| J5_5UZ4_001 | No text annotation | ||
| J5_5UZ4_002 | No text annotation | ||
| J5_5UZ4_003 | No text annotation | ||
| J5_5UZ4_004 | No text annotation | ||
| J6_5UZ4_001 | No text annotation |
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