HL_5UZ4_009

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5UZ4|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UZ4_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.2333

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5UZ4|1|A|C|342
5UZ4|1|A|U|343
5UZ4|1|A|A|344
5UZ4|1|A|C|345
5UZ4|1|A|G|346
5UZ4|1|A|G|347

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains