HL_5V3I_001

3D structure

PDB id

5V3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - wild-type C634

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GCGUCGUCGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V3I_001 not in the Motif Atlas

Geometric match to HL_4UYK_001

Geometric discrepancy: 0.2823

The information below is about HL_4UYK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14063.2

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5V3I|1|A|G|625
5V3I|1|A|C|626
5V3I|1|A|G|627
5V3I|1|A|U|628
5V3I|1|A|C|629
5V3I|1|A|G|630
5V3I|1|A|U|631
5V3I|1|A|C|632
5V3I|1|A|G|633
5V3I|1|A|C|634
5V3I|1|A|C|635

Current chains

Chain A

VS Ribozyme RNA

Nearby chains