HL_5V3I_003

3D structure

PDB id

5V3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - wild-type C634

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GUUGACUAC

Length

9 nucleotides

Bulged bases

5V3I|1|A|U|695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V3I_003 not in the Motif Atlas

Geometric match to HL_4R4V_003

Geometric discrepancy: 0.1643

The information below is about HL_4R4V_003

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

T-loop

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5V3I|1|A|G|689
5V3I|1|A|U|690
5V3I|1|A|U|691
5V3I|1|A|G|692
5V3I|1|A|A|693
5V3I|1|A|C|694
5V3I|1|A|U|695
5V3I|1|A|A|696
5V3I|1|A|C|697

Current chains

Chain A

VS Ribozyme RNA

Nearby chains