HL_5V7Q_003

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUGAUGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_003 not in the Motif Atlas

Geometric match to HL_5TBW_028

Geometric discrepancy: 0.3623

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5V7Q|1|A|G|136
5V7Q|1|A|A|137
5V7Q|1|A|G|138
5V7Q|1|A|U|139
5V7Q|1|A|G|140
5V7Q|1|A|A|141
5V7Q|1|A|U|142
5V7Q|1|A|G|143
5V7Q|1|A|U|144
5V7Q|1|A|C|145

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23