5V7Q Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_5V7Q_072 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
HL_5V7Q_001 | 1/A/87:96 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.1 | |
HL_5V7Q_002 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
HL_5V7Q_081 | 1/A/137:144 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.1 | |
HL_5V7Q_004 | 1/A/160:170 | No text annotation | homologous HL_5J7L_138 NA | |
HL_5V7Q_005 | 1/A/196:203 | No text annotation | homologous HL_5J7L_139 NA | |
HL_5V7Q_006 | 1/A/227:232 | No text annotation | homologous HL_5J7L_140 NA | |
HL_5V7Q_007 | 1/A/248:254 | No text annotation | homologous HL_7RQB_008 NA | |
HL_5V7Q_010 | 1/A/388:395 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
HL_5V7Q_011 | 1/A/410:418 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
HL_5V7Q_012 | 1/A/470:482 | No text annotation | homologous HL_4WF9_013 HL_69139.1 | |
HL_5V7Q_013 | 1/A/499:506 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.4 | |
HL_5V7Q_014 | 1/A/551:556 | GNRA | homologous HL_7RQB_015 NA | |
HL_5V7Q_015 | 1/A/576:581 | GNRA | homologous HL_7RQB_016 NA | |
HL_5V7Q_017 | 1/A/668:677 | T-loop with 2 stacked bulged bases | geometric HL_7A0S_018 HL_33597.1 | |
HL_5V7Q_018 | 1/A/715:720 | No text annotation | geometric HL_7RQB_011 NA | |
HL_5V7Q_074 | 1/A/745:751 | GNRA | homologous HL_9DFE_019 HL_34789.1 | |
HL_5V7Q_022 | 1/A/873:882 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
HL_5V7Q_023 | 1/A/908:914 | No text annotation | geometric HL_7A0S_007 HL_51020.1 | |
HL_5V7Q_024 | 1/A/955:960 | No text annotation | homologous HL_7RQB_025 NA | |
HL_5V7Q_025 | 1/A/1083:1090 | GNRA | homologous HL_7A0S_026 HL_34789.1 | |
HL_5V7Q_026 | 1/A/1107:1114 | No text annotation | homologous HL_5J7L_160 NA | |
HL_5V7Q_030 | 1/A/1353:1358 | GNRA | homologous HL_5J7L_164 NA | |
HL_5V7Q_082 | 1/A/1412:1420 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.1 | |
HL_5V7Q_032 | 1/A/1455:1461 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
HL_5V7Q_033 | 1/A/1494:1499 | GNRA | homologous HL_5J7L_167 NA | |
HL_5V7Q_034 | 1/A/1520:1529 | No text annotation | homologous HL_7RQB_036 NA | |
HL_5V7Q_035 | 1/A/1600:1605 | UNCG variation | geometric HL_2NUE_001 NA | |
HL_5V7Q_036 | 1/A/1688:1699 | No text annotation | ||
HL_5V7Q_037 | 1/A/1729:1735 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
HL_5V7Q_039 | 1/A/1802:1805 | Mini UNCG | geometric HL_5F9R_002 HL_90436.1 | |
HL_5V7Q_040 | 1/A/1847:1854 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
HL_5V7Q_041 | 1/A/1865:1871 | GNRA | homologous HL_5J7L_174 NA | |
HL_5V7Q_042 | 1/A/1926:1931 | UNCG | geometric HL_4PMI_004 NA | |
HL_5V7Q_043 | 1/A/1961:1967 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.1 | |
HL_5V7Q_044 | 1/A/1986:1990 | No text annotation | homologous HL_7RQB_044 NA | |
HL_5V7Q_077 | 1/A/2011:2021 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
HL_5V7Q_046 | 1/A/2040:2045 | GNRA | homologous HL_7RQB_046 NA | |
HL_5V7Q_049 | 1/A/2187:2195 | No text annotation | homologous HL_7A0S_048 HL_61418.1 | |
HL_5V7Q_050 | 1/A/2265:2274 | No text annotation | homologous HL_7RQB_050 NA | |
HL_5V7Q_052 | 1/A/2445:2454 | No text annotation | homologous HL_4WF9_069 NA | |
HL_5V7Q_078 | 1/A/2486:2494 | No text annotation | homologous HL_7A0S_052 HL_11974.1 | |
HL_5V7Q_054 | 1/A/2502:2514 | No text annotation | homologous HL_7RQB_054 NA | |
HL_5V7Q_055 | 1/A/2541:2551 | No text annotation | homologous HL_7RQB_055 NA | |
HL_5V7Q_056 | 1/A/2562:2569 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
HL_5V7Q_057 | 1/A/2593:2600 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
HL_5V7Q_058 | 1/A/2612:2617 | GNRA | homologous HL_7RQB_058 NA | |
HL_5V7Q_059 | 1/A/2642:2651 | No text annotation | homologous HL_7RQB_059 NA | |
HL_5V7Q_060 | 1/A/2704:2722 | No text annotation | ||
HL_5V7Q_079 | 1/A/2766:2773 | GNRA variation | homologous HL_4WF9_057 HL_46665.1 | |
HL_5V7Q_062 | 1/A/2789:2795 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
HL_5V7Q_063 | 1/A/2832:2837 | GNRA | homologous HL_7RQB_063 NA | |
HL_5V7Q_064 | 1/A/2896:2901 | GNRA | homologous HL_4WF9_060 HL_34789.1 | |
HL_5V7Q_065 | 1/A/2939:2944 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
HL_5V7Q_080 | 1/A/2983:2997 | No text annotation | homologous HL_5J7L_199 NA | |
HL_5V7Q_067 | 1/A/3032:3038 | No text annotation | geometric HL_5TBW_006 NA | |
HL_5V7Q_068 | 1/A/3054:3062 | No text annotation | homologous HL_7RQB_068 NA | |
HL_5V7Q_069 | 1/A/3091:3096 | GNRA | homologous HL_5J7L_202 NA | |
HL_5V7Q_070 | 1/B/37:43 | No text annotation | geometric HL_7RQB_070 NA | |
HL_5V7Q_071 | 1/B/83:88 | GNRA | geometric HL_5M0J_002 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_5V7Q_003 | No text annotation | ||
HL_5V7Q_073 | No text annotation | ||
HL_5V7Q_008 | Pseudoknot geometry | ||
HL_5V7Q_009 | No text annotation | ||
HL_5V7Q_016 | No text annotation | ||
HL_5V7Q_019 | tRNA anticodon loop | ||
HL_5V7Q_020 | GNRA | ||
HL_5V7Q_021 | GNRA wlth tandem sheared | ||
HL_5V7Q_027 | No text annotation | ||
HL_5V7Q_028 | GNRA wlth tandem sheared | ||
HL_5V7Q_029 | No text annotation | ||
HL_5V7Q_031 | No text annotation | ||
HL_5V7Q_075 | No text annotation | ||
HL_5V7Q_038 | No text annotation | ||
HL_5V7Q_076 | No text annotation | ||
HL_5V7Q_083 | No text annotation | ||
HL_5V7Q_045 | No text annotation | ||
HL_5V7Q_047 | No text annotation | ||
HL_5V7Q_048 | No text annotation | ||
HL_5V7Q_051 | No text annotation | ||
HL_5V7Q_053 | No text annotation | ||
HL_5V7Q_061 | No text annotation | ||
HL_5V7Q_066 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_5V7Q_001 | 1/A/24:30, 1/A/598:604 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.1 | |
IL_5V7Q_002 | 1/A/36:37, 1/A/531:533 | Single bulged A | homologous IL_7A0S_002 IL_14190.1 | |
IL_5V7Q_003 | 1/A/43:44, 1/A/523:525 | Minor groove platform | homologous IL_5J7L_247 NA | |
IL_5V7Q_004 | 1/A/56:76, 1/A/110:114 | No text annotation | geometric IL_5TBW_144 NA | |
IL_5V7Q_005 | 1/A/81:85, 1/A/98:105 | Kink-turn | homologous IL_4WF9_004 IL_54465.1 | |
IL_5V7Q_006 | 1/A/185:186, 1/A/214:216 | Single stack bend | homologous IL_7A0S_005 IL_15011.1 | |
IL_5V7Q_007 | 1/A/190:196, 1/A/203:210 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_62167.1 | |
IL_5V7Q_008 | 1/A/241:247, 1/A/255:260 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
IL_5V7Q_011 | 1/A/356:365, 1/A/439:441 | No text annotation | ||
IL_5V7Q_012 | 1/A/370:372, 1/A/433:434 | Single bulged A | geometric IL_4WF9_098 IL_14190.1 | |
IL_5V7Q_117 | 1/A/375:377, 1/A/426:430 | No text annotation | homologous IL_4WF9_014 IL_76658.1 | |
IL_5V7Q_014 | 1/A/383:385, 1/A/398:399 | Single bulged U | geometric IL_3TZR_002 NA | |
IL_5V7Q_015 | 1/A/570:573, 1/A/584:597 | No text annotation | geometric IL_5J7L_255 NA | |
IL_5V7Q_016 | 1/A/624:627, 1/A/656:659 | Double sheared | homologous IL_5J7L_256 NA | |
IL_5V7Q_118 | 1/A/624:629, 1/A/654:659 | No text annotation | ||
IL_5V7Q_017 | 1/A/629:631, 1/A/652:654 | Isolated non-canonical cWW pair | geometric IL_5MWI_006 NA | |
IL_5V7Q_019 | 1/A/666:668, 1/A/677:679 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.1 | |
IL_5V7Q_119 | 1/A/691:695, 1/A/794:797 | Tandem non-canonical cWW pairs | geometric IL_422D_001 NA | |
IL_5V7Q_020 | 1/A/693:695, 1/A/794:795 | Single bulged A | homologous IL_7A0S_012 IL_14190.1 | |
IL_5V7Q_021 | 1/A/709:713, 1/A/722:726 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
IL_5V7Q_022 | 1/A/801:803, 1/A/935:937 | No text annotation | homologous IL_7RQB_017 NA | |
IL_5V7Q_023 | 1/A/803:807, 1/A/928:935 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
IL_5V7Q_024 | 1/A/826:827, 1/A/892:894 | Single bulged A | geometric IL_4V9F_025 IL_14190.1 | |
IL_5V7Q_025 | 1/A/831:832, 1/A/857:859 | Single bulged G | homologous IL_7RQB_020 NA | |
IL_5V7Q_120 | 1/A/832:836, 1/A/853:857 | Triple sheared | homologous IL_4WF9_024 IL_15190.1 | |
IL_5V7Q_027 | 1/A/867:869, 1/A/886:887 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
IL_5V7Q_028 | 1/A/904:906, 1/A/916:920 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
IL_5V7Q_029 | 1/A/966:967, 1/A/1068:1070 | Single stack bend | homologous IL_7A0S_022 IL_15011.1 | |
IL_5V7Q_030 | 1/A/973:978, 1/A/1057:1062 | No text annotation | ||
IL_5V7Q_121 | 1/A/973:980, 1/A/1055:1062 | No text annotation | ||
IL_5V7Q_031 | 1/A/983:991, 1/A/1044:1052 | No text annotation | ||
IL_5V7Q_139 | 1/A/985:992, 1/A/1042:1050 | No text annotation | ||
IL_5V7Q_032 | 1/A/991:992, 1/A/1042:1044 | Minor groove platform | homologous IL_7RQB_028 NA | |
IL_5V7Q_123 | 1/A/993:998, 1/A/1038:1041 | C-loop | homologous IL_4WF9_033 IL_16301.1 | |
IL_5V7Q_034 | 1/A/1000:1002, 1/A/1034:1036 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
IL_5V7Q_035 | 1/A/1005:1010, 1/A/1026:1031 | No text annotation | geometric IL_5J7L_057 NA | |
IL_5V7Q_124 | 1/A/1077:1078, 1/A/1095:1097 | Single bulged A | geometric IL_2C4Q_001 IL_14190.1 | |
IL_5V7Q_038 | 1/A/1123:1125, 1/A/1289:1290 | Single bulged C | homologous IL_5J7L_276 NA | |
IL_5V7Q_039 | 1/A/1127:1131, 1/A/1283:1287 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
IL_5V7Q_040 | 1/A/1133:1140, 1/A/1280:1281 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
IL_5V7Q_125 | 1/A/1133:1142, 1/A/1279:1281 | No text annotation | ||
IL_5V7Q_041 | 1/A/1140:1142, 1/A/1279:1280 | Single bulged U | homologous IL_4WF9_038 IL_97561.1 | |
IL_5V7Q_042 | 1/A/1147:1153, 1/A/1269:1274 | No text annotation | homologous IL_7RQB_039 NA | |
IL_5V7Q_126 | 1/A/1147:1159, 1/A/1253:1274 | No text annotation | ||
IL_5V7Q_043 | 1/A/1153:1159, 1/A/1253:1269 | No text annotation | geometric IL_5J7L_281 NA | |
IL_5V7Q_044 | 1/A/1160:1163, 1/A/1250:1252 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_30229.1 | |
IL_5V7Q_047 | 1/A/1328:1330, 1/A/1378:1381 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.4 | |
IL_5V7Q_128 | 1/A/1339:1346, 1/A/1365:1369 | Kink-turn | homologous IL_4WF9_046 IL_90775.1 | |
IL_5V7Q_049 | 1/A/1393:1400, 1/A/2249:2255 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
IL_5V7Q_050 | 1/A/1450:1454, 1/A/1462:1464 | C-loop | homologous IL_5J7L_291 NA | |
IL_5V7Q_051 | 1/A/1482:1486, 1/A/1507:1511 | UAA/GAN | homologous IL_7RQB_052 NA | |
IL_5V7Q_052 | 1/A/1488:1492, 1/A/1501:1505 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
IL_5V7Q_129 | 1/A/1544:1546, 1/A/1822:1824 | Isolated non-canonical cWW pair | geometric IL_8D29_001 IL_01003.1 | |
IL_5V7Q_054 | 1/A/1556:1561, 1/A/1642:1649 | No text annotation | ||
IL_5V7Q_056 | 1/A/1576:1578, 1/A/1626:1628 | Isolated non-canonical cWW pair | geometric IL_3RG5_002 IL_68118.1 | |
IL_5V7Q_057 | 1/A/1579:1583, 1/A/1621:1625 | Triple sheared | geometric IL_3IGI_002 IL_15190.1 | |
IL_5V7Q_130 | 1/A/1587:1592, 1/A/1613:1617 | No text annotation | ||
IL_5V7Q_060 | 1/A/1655:1659, 1/A/1814:1817 | No text annotation | ||
IL_5V7Q_140 | 1/A/1670:1673, 1/A/1794:1798 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
IL_5V7Q_062 | 1/A/1675:1678, 1/A/1788:1792 | tSH-tHW | homologous IL_7RQB_057 NA | |
IL_5V7Q_063 | 1/A/1706:1709, 1/A/1759:1763 | No text annotation | homologous IL_5J7L_299 NA | |
IL_5V7Q_133 | 1/A/1711:1716, 1/A/1752:1757 | No text annotation | ||
IL_5V7Q_065 | 1/A/1719:1720, 1/A/1743:1749 | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
IL_5V7Q_066 | 1/A/1726:1728, 1/A/1736:1737 | Single bulged A | homologous IL_7RQB_062 NA | |
IL_5V7Q_067 | 1/A/1886:1891, 1/A/2242:2244 | No text annotation | ||
IL_5V7Q_068 | 1/A/1898:1900, 1/A/2233:2235 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
IL_5V7Q_069 | 1/A/1901:1904, 1/A/2231:2232 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
IL_5V7Q_134 | 1/A/1901:1909, 1/A/2228:2232 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
IL_5V7Q_070 | 1/A/1904:1909, 1/A/2228:2231 | Intercalated tWH | homologous IL_5J7L_307 NA | |
IL_5V7Q_071 | 1/A/1921:1926, 1/A/1931:1937 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
IL_5V7Q_072 | 1/A/1947:1952, 1/A/1977:1980 | tWW and near cWH | geometric IL_6DLR_005 IL_40706.1 | |
IL_5V7Q_073 | 1/A/1952:1960, 1/A/1968:1977 | No text annotation | ||
IL_5V7Q_074 | 1/A/2004:2005, 1/A/2218:2220 | Single bulged A | homologous IL_7RQB_069 NA | |
IL_5V7Q_075 | 1/A/2032:2038, 1/A/2047:2055 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
IL_5V7Q_076 | 1/A/2071:2074, 1/A/2140:2141 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_73108.1 | |
IL_5V7Q_135 | 1/A/2071:2076, 1/A/2136:2141 | No text annotation | ||
IL_5V7Q_077 | 1/A/2075:2076, 1/A/2136:2139 | Major groove intercalation | homologous IL_5J7L_315 NA | |
IL_5V7Q_078 | 1/A/2080:2083, 1/A/2131:2132 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
IL_5V7Q_079 | 1/A/2085:2089, 1/A/2125:2129 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
IL_5V7Q_080 | 1/A/2090:2095, 1/A/2119:2124 | No text annotation | ||
IL_5V7Q_081 | 1/A/2098:2101, 1/A/2112:2116 | UAA/GAN related | homologous IL_5J7L_317 NA | |
IL_5V7Q_082 | 1/A/2171:2172, 1/A/2202:2205 | Bulged stacked bases | homologous IL_7A0S_071 IL_24886.1 | |
IL_5V7Q_083 | 1/A/2172:2183, 1/A/2199:2202 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
IL_5V7Q_084 | 1/A/2288:2290, 1/A/2855:2856 | Major groove platform | homologous IL_5J7L_320 NA | |
IL_5V7Q_085 | 1/A/2292:2294, 1/A/2850:2853 | No text annotation | homologous IL_5J7L_321 NA | |
IL_5V7Q_086 | 1/A/2306:2308, 1/A/2676:2680 | No text annotation | ||
IL_5V7Q_087 | 1/A/2316:2321, 1/A/2473:2479 | No text annotation | ||
IL_5V7Q_088 | 1/A/2322:2324, 1/A/2470:2472 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.1 | |
IL_5V7Q_141 | 1/A/2344:2380, 1/A/2385:2419 | No text annotation | ||
IL_5V7Q_090 | 1/A/2439:2441, 1/A/2458:2459 | Single bulged U | homologous IL_5J7L_331 NA | |
IL_5V7Q_091 | 1/A/2588:2591, 1/A/2602:2605 | Double sheared | homologous IL_4WF9_087 IL_58355.1 | |
IL_5V7Q_092 | 1/A/2639:2641, 1/A/2652:2653 | No text annotation | ||
IL_5V7Q_093 | 1/A/2691:2692, 1/A/2736:2738 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
IL_5V7Q_094 | 1/A/2692:2693, 1/A/2734:2736 | Major groove platform | homologous IL_7RQB_092 NA | |
IL_5V7Q_137 | 1/A/2695:2697, 1/A/2731:2732 | Major groove platform | homologous IL_7A0S_085 IL_48076.7 | |
IL_5V7Q_096 | 1/A/2697:2701, 1/A/2725:2731 | No text annotation | ||
IL_5V7Q_097 | 1/A/2745:2746, 1/A/2818:2820 | Major groove platform | homologous IL_7RQB_096 NA | |
IL_5V7Q_098 | 1/A/2748:2750, 1/A/2812:2816 | Isolated non-canonical cWW with bulges | geometric IL_7A0S_089 IL_68118.1 | |
IL_5V7Q_099 | 1/A/2750:2751, 1/A/2809:2812 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.1 | |
IL_5V7Q_100 | 1/A/2759:2761, 1/A/2778:2782 | No text annotation | geometric IL_7EL1_001 IL_65498.1 | |
IL_5V7Q_101 | 1/A/2827:2830, 1/A/2839:2843 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.1 | |
IL_5V7Q_102 | 1/A/2874:2878, 1/A/3012:3020 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
IL_5V7Q_103 | 1/A/2890:2896, 1/A/2901:2906 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.5 | |
IL_5V7Q_104 | 1/A/2918:2922, 1/A/2963:2965 | C-loop | homologous IL_5J7L_347 NA | |
IL_5V7Q_105 | 1/A/2925:2929, 1/A/2956:2960 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
IL_5V7Q_106 | 1/A/2933:2934, 1/A/2949:2952 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.1 | |
IL_5V7Q_107 | 1/A/2975:2980, 1/A/3000:3005 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
IL_5V7Q_108 | 1/A/3073:3074, 1/A/3113:3115 | Single bulged C | homologous IL_7RQB_108 NA | |
IL_5V7Q_109 | 1/A/3078:3080, 1/A/3106:3109 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
IL_5V7Q_110 | 1/A/3082:3087, 1/A/3100:3104 | No text annotation | homologous IL_7A0S_101 IL_48489.1 | |
IL_5V7Q_112 | 1/B/22:28, 1/B/54:59 | No text annotation | ||
IL_5V7Q_114 | 1/B/33:37, 1/B/43:47 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
IL_5V7Q_115 | 1/B/70:78, 1/B/93:101 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_5V7Q_116 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | ||
IL_5V7Q_009 | No text annotation | ||
IL_5V7Q_010 | No text annotation | ||
IL_5V7Q_013 | No text annotation | ||
IL_5V7Q_018 | No text annotation | ||
IL_5V7Q_026 | Triple sheared with non-canonical cWW | ||
IL_5V7Q_122 | No text annotation | ||
IL_5V7Q_033 | No text annotation | ||
IL_5V7Q_036 | No text annotation | ||
IL_5V7Q_037 | Isolated non-canonical cWW pair | ||
IL_5V7Q_045 | No text annotation | ||
IL_5V7Q_046 | No text annotation | ||
IL_5V7Q_127 | Tandem non-canonical cWW pairs | ||
IL_5V7Q_048 | Kink-turn | ||
IL_5V7Q_053 | Tandem non-canonical cWW pairs | ||
IL_5V7Q_055 | No text annotation | ||
IL_5V7Q_058 | No text annotation | ||
IL_5V7Q_059 | Isolated non-canonical cWW pair | ||
IL_5V7Q_061 | No text annotation | ||
IL_5V7Q_131 | No text annotation | ||
IL_5V7Q_132 | tSH-tHW-tHS | ||
IL_5V7Q_064 | No text annotation | ||
IL_5V7Q_089 | No text annotation | ||
IL_5V7Q_136 | Double sheared with near cWW | ||
IL_5V7Q_095 | Major groove platform with extra pair | ||
IL_5V7Q_138 | Isolated non-canonical cWW pair | ||
IL_5V7Q_111 | Major groove intercalation | ||
IL_5V7Q_113 | Major groove minor groove platform; mini C-loop |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_5V7Q_001 | 1/A/30:31, 1/A/563:570, 1/A/597:598 | No text annotation | homologous J3_7RQB_001 NA | |
J3_5V7Q_015 | 1/A/30:31, 1/A/563:573, 1/A/584:598 | No text annotation | homologous J3_5J7L_066 NA | |
J3_5V7Q_016 | 1/A/32:35, 1/A/534:550, 1/A/557:562 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
J3_5V7Q_017 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
J3_5V7Q_018 | 1/A/318:320, 1/A/458:464, 1/A/488:493 | No text annotation | ||
J3_5V7Q_020 | 1/A/379:385, 1/A/398:408, 1/A/420:424 | No text annotation | ||
J3_5V7Q_002 | 1/A/812:818, 1/A/902:904, 1/A/920:923 | No text annotation | homologous J3_4WF9_002 J3_46658.1 | |
J3_5V7Q_021 | 1/A/827:829, 1/A/861:865, 1/A/889:892 | No text annotation | homologous J3_4WF9_003 J3_69816.1 | |
J3_5V7Q_005 | 1/A/1429:1434, 1/A/1860:1862, 1/A/1874:1877 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
J3_5V7Q_006 | 1/A/1436:1440, 1/A/1840:1846, 1/A/1855:1858 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
J3_5V7Q_007 | 1/A/1475:1481, 1/A/1512:1516, 1/A/1533:1534 | No text annotation | homologous J3_7RQB_009 NA | |
J3_5V7Q_008 | 1/A/1547:1553, 1/A/1652:1654, 1/A/1818:1821 | No text annotation | ||
J3_5V7Q_009 | 1/A/1663:1667, 1/A/1801:1802, 1/A/1805:1810 | No text annotation | geometric J3_4V9F_017 J3_08594.1 | |
J3_5V7Q_010 | 1/A/2328:2330, 1/A/2433:2437, 1/A/2461:2466 | No text annotation | homologous J3_7A0S_009 J3_17460.1 | |
J3_5V7Q_011 | 1/A/2533:2537, 1/A/2555:2561, 1/A/2570:2575 | No text annotation | homologous J3_5J7L_071 NA | |
J3_5V7Q_026 | 1/A/2755:2758, 1/A/2783:2785, 1/A/2799:2805 | No text annotation | homologous J3_9DFE_017 J3_32601.6 | |
J3_5V7Q_027 | 1/A/3049:3051, 1/A/3065:3071, 1/A/3117:3121 | No text annotation | ||
J3_5V7Q_014 | 1/B/9:15, 1/B/67:69, 1/B/102:106 | No text annotation | homologous J3_5J7L_049 NA | |
J4_5V7Q_010 | 1/A/270:275, 1/A/313:318, 1/A/493:497, 1/A/508:513 | No text annotation | ||
J4_5V7Q_002 | 1/A/704:708, 1/A/727:742, 1/A/754:761, 1/A/778:785 | No text annotation | ||
J4_5V7Q_003 | 1/A/1401:1407, 1/A/1425:1426, 1/A/1880:1883, 1/A/2247:2248 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
J4_5V7Q_004 | 1/A/1441:1445, 1/A/1469:1474, 1/A/1535:1536, 1/A/1832:1839 | No text annotation | ||
J4_5V7Q_005 | 1/A/1681:1684, 1/A/1703:1705, 1/A/1764:1768, 1/A/1779:1785 | No text annotation | ||
J4_5V7Q_006 | 1/A/2005:2010, 1/A/2022:2026, 1/A/2061:2064, 1/A/2213:2218 | No text annotation | ||
J4_5V7Q_011 | 1/A/2067:2069, 1/A/2143:2144, 1/A/2162:2171, 1/A/2205:2210 | No text annotation | homologous J4_5J7L_026 NA | |
J4_5V7Q_008 | 1/A/2523:2527, 1/A/2581:2585, 1/A/2608:2610, 1/A/2619:2621 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
J4_5V7Q_009 | 1/A/2880:2884, 1/A/2912:2914, 1/A/2969:2973, 1/A/3007:3010 | No text annotation | ||
J5_5V7Q_007 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/150:153, 1/A/177:180 | No text annotation | ||
J5_5V7Q_008 | 1/A/270:275, 1/A/313:320, 1/A/458:464, 1/A/488:497, 1/A/508:513 | No text annotation | ||
J5_5V7Q_002 | 1/A/270:275, 1/A/313:320, 1/A/458:464, 1/A/488:498, 1/A/507:513 | No text annotation | ||
J5_5V7Q_003 | 1/A/619:621, 1/A/662:666, 1/A/679:681, 1/A/1392:1393, 1/A/2255:2256 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
J5_5V7Q_004 | 1/A/686:691, 1/A/797:800, 1/A/938:941, 1/A/1327:1328, 1/A/1381:1387 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
J5_5V7Q_005 | 1/A/1909:1917, 1/A/1941:1942, 1/A/1985:1986, 1/A/1990:1998, 1/A/2226:2228 | No text annotation | homologous J5_5J7L_016 NA | |
J5_5V7Q_006 | 1/A/2295:2302, 1/A/2684:2691, 1/A/2738:2745, 1/A/2820:2826, 1/A/2844:2849 | No text annotation | ||
J6_5V7Q_001 | 1/A/45:46, 1/A/181:185, 1/A/216:226, 1/A/233:237, 1/A/264:268, 1/A/515:522 | No text annotation | ||
J6_5V7Q_002 | 1/A/2311:2321, 1/A/2473:2484, 1/A/2496:2497, 1/A/2519:2522, 1/A/2622:2633, 1/A/2659:2673 | No text annotation | ||
J7_5V7Q_001 | 1/A/945:951, 1/A/964:965, 1/A/1071:1074, 1/A/1100:1105, 1/A/1116:1120, 1/A/1293:1294, 1/A/1317:1323 | No text annotation | ||
J8_5V7Q_002 | 1/A/7:15, 1/A/613:619, 1/A/2256:2261, 1/A/2278:2281, 1/A/2863:2868, 1/A/3026:3029, 1/A/3041:3046, 1/A/3124:3130 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_5V7Q_024 | No text annotation | ||
J3_5V7Q_019 | No text annotation | ||
J3_5V7Q_003 | No text annotation | ||
J3_5V7Q_004 | No text annotation | ||
J3_5V7Q_022 | No text annotation | ||
J3_5V7Q_025 | No text annotation | ||
J3_5V7Q_012 | No text annotation | ||
J3_5V7Q_013 | No text annotation | ||
J3_5V7Q_023 | No text annotation | ||
J4_5V7Q_001 | No text annotation | ||
J4_5V7Q_007 | No text annotation | ||
J5_5V7Q_001 | No text annotation | ||
J8_5V7Q_001 | No text annotation |
Coloring options: