HL_5V7Q_005

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5V7Q|1|A|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_005 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.1493

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5V7Q|1|A|G|196
5V7Q|1|A|A|197
5V7Q|1|A|A|198
5V7Q|1|A|A|199
5V7Q|1|A|C|200
5V7Q|1|A|A|201
5V7Q|1|A|U|202
5V7Q|1|A|C|203

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28