HL_5V7Q_010

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGGAUG

Length

8 nucleotides

Bulged bases

5V7Q|1|A|U|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_010 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1377

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5V7Q|1|A|C|388
5V7Q|1|A|U|389
5V7Q|1|A|G|390
5V7Q|1|A|G|391
5V7Q|1|A|G|392
5V7Q|1|A|A|393
5V7Q|1|A|U|394
5V7Q|1|A|G|395

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24