HL_5V7Q_023

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5V7Q|1|A|A|910, 5V7Q|1|A|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_023 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.2687

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

5V7Q|1|A|U|908
5V7Q|1|A|G|909
5V7Q|1|A|A|910
5V7Q|1|A|A|911
5V7Q|1|A|A|912
5V7Q|1|A|G|913
5V7Q|1|A|G|914

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2