HL_5V7Q_032

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

5V7Q|1|A|C|1456, 5V7Q|1|A|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_032 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.2554

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

5V7Q|1|A|G|1455
5V7Q|1|A|C|1456
5V7Q|1|A|C|1457
5V7Q|1|A|A|1458
5V7Q|1|A|G|1459
5V7Q|1|A|U|1460
5V7Q|1|A|C|1461

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22