HL_5V7Q_034

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5V7Q|1|A|U|1527, 5V7Q|1|A|U|1528

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1989

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5V7Q|1|A|G|1520
5V7Q|1|A|U|1521
5V7Q|1|A|U|1522
5V7Q|1|A|G|1523
5V7Q|1|A|A|1524
5V7Q|1|A|U|1525
5V7Q|1|A|A|1526
5V7Q|1|A|U|1527
5V7Q|1|A|U|1528
5V7Q|1|A|C|1529

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23