HL_5V7Q_040

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5V7Q|1|A|A|1849, 5V7Q|1|A|A|1851, 5V7Q|1|A|A|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_040 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1532

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

5V7Q|1|A|C|1847
5V7Q|1|A|G|1848
5V7Q|1|A|A|1849
5V7Q|1|A|C|1850
5V7Q|1|A|A|1851
5V7Q|1|A|C|1852
5V7Q|1|A|A|1853
5V7Q|1|A|G|1854

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain S

50S ribosomal protein L22