HL_5V7Q_042

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5V7Q|1|A|U|1928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_042 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.1341

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

5V7Q|1|A|C|1926
5V7Q|1|A|U|1927
5V7Q|1|A|U|1928
5V7Q|1|A|C|1929
5V7Q|1|A|G|1930
5V7Q|1|A|G|1931

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2