HL_5V7Q_068

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAGAACAC

Length

9 nucleotides

Bulged bases

5V7Q|1|A|C|3055

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_068 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1783

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5V7Q|1|A|G|3054
5V7Q|1|A|C|3055
5V7Q|1|A|A|3056
5V7Q|1|A|G|3057
5V7Q|1|A|A|3058
5V7Q|1|A|A|3059
5V7Q|1|A|C|3060
5V7Q|1|A|A|3061
5V7Q|1|A|C|3062

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17