HL_5V93_001

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGGGAGGCUGC

Length

12 nucleotides

Bulged bases

5V93|1|A|G|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_001 not in the Motif Atlas

Geometric match to HL_4V83_139

Geometric discrepancy: 0.3535

The information below is about HL_4V83_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

5V93|1|A|G|58
5V93|1|A|U|59
5V93|1|A|G|60
5V93|1|A|G|61
5V93|1|A|G|62
5V93|1|A|A|63
5V93|1|A|G|64
5V93|1|A|G|65
5V93|1|A|C|66
5V93|1|A|U|67
5V93|1|A|G|68
5V93|1|A|C|69

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23

Chain Y

50S ribosomal protein L29