HL_5V93_012

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

5V93|1|A|G|412, 5V93|1|A|A|413, 5V93|1|A|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1334

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5V93|1|A|G|410
5V93|1|A|U|411
5V93|1|A|G|412
5V93|1|A|A|413
5V93|1|A|G|414
5V93|1|A|A|415
5V93|1|A|G|416
5V93|1|A|C|417
5V93|1|A|C|418

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24