HL_5V93_014

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5V93|1|A|G|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_014 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1356

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5V93|1|A|G|499
5V93|1|A|G|500
5V93|1|A|A|501
5V93|1|A|C|502
5V93|1|A|C|503
5V93|1|A|A|504
5V93|1|A|C|505
5V93|1|A|C|506

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15