HL_5V93_044

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAGAGCAUA

Length

9 nucleotides

Bulged bases

5V93|1|A|C|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_044 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.3729

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5V93|1|A|U|1864
5V93|1|A|A|1865
5V93|1|A|G|1866
5V93|1|A|A|1867
5V93|1|A|G|1868
5V93|1|A|C|1869
5V93|1|A|A|1870
5V93|1|A|U|1871
5V93|1|A|A|1872

Current chains

Chain A

23S rRNA

Nearby chains