HL_5V93_051

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5V93|1|A|A|2151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_051 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2221

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5V93|1|A|G|2148
5V93|1|A|U|2149
5V93|1|A|A|2150
5V93|1|A|A|2151
5V93|1|A|C|2152
5V93|1|A|U|2153
5V93|1|A|A|2154
5V93|1|A|U|2155
5V93|1|A|A|2156
5V93|1|A|A|2157
5V93|1|A|C|2158

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain b

Capreomycin