HL_5V93_052

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGUAAGUUCC

Length

11 nucleotides

Bulged bases

5V93|1|A|U|2193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_052 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3765

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5V93|1|A|G|2186
5V93|1|A|G|2187
5V93|1|A|G|2188
5V93|1|A|U|2189
5V93|1|A|A|2190
5V93|1|A|A|2191
5V93|1|A|G|2192
5V93|1|A|U|2193
5V93|1|A|U|2194
5V93|1|A|C|2195
5V93|1|A|C|2196

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA