HL_5V93_057

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

5V93|1|A|A|2506, 5V93|1|A|C|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_057 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1418

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5V93|1|A|C|2502
5V93|1|A|U|2503
5V93|1|A|A|2504
5V93|1|A|A|2505
5V93|1|A|A|2506
5V93|1|A|A|2507
5V93|1|A|U|2508
5V93|1|A|G|2509
5V93|1|A|U|2510
5V93|1|A|A|2511
5V93|1|A|A|2512
5V93|1|A|C|2513
5V93|1|A|G|2514

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27