HL_5V93_059

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUAAAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_059 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.2282

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5V93|1|A|U|2562
5V93|1|A|G|2563
5V93|1|A|U|2564
5V93|1|A|A|2565
5V93|1|A|A|2566
5V93|1|A|A|2567
5V93|1|A|U|2568
5V93|1|A|G|2569

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27