HL_5V93_063

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

5V93|1|A|U|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_063 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2426

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5V93|1|A|A|2709
5V93|1|A|G|2710
5V93|1|A|U|2711
5V93|1|A|C|2712
5V93|1|A|C|2713
5V93|1|A|A|2714
5V93|1|A|U|2715
5V93|1|A|A|2716
5V93|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain M

50S ribosomal protein L16