HL_5V93_098

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_098 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3698

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5V93|1|a|C|1125
5V93|1|a|G|1126
5V93|1|a|U|1127
5V93|1|a|A|1128
5V93|1|a|A|1129
5V93|1|a|U|1130
5V93|1|a|G|1131
5V93|1|a|G|1132

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9