HL_5VOE_001

3D structure

PDB id

5VOE (explore in PDB, NAKB, or RNA 3D Hub)

Description

DesGla-XaS195A Bound to Aptamer 11F7t

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

GA(UFT)AA(UFT)A(CFL)

Length

8 nucleotides

Bulged bases

5VOE|1|A|A|18, 5VOE|1|A|A|21

QA status

Modified nucleotides: UFT, CFL

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20535.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5VOE|1|A|G|15
5VOE|1|A|A|16
5VOE|1|A|UFT|17
5VOE|1|A|A|18
5VOE|1|A|A|19
5VOE|1|A|UFT|20
5VOE|1|A|A|21
5VOE|1|A|CFL|22

Current chains

Chain A

Aptamer 11F7t (36-MER)

Nearby chains

Chain H

Coagulation factor X