HL_5VP2_011
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAAAGCC
- Length
- 9 nucleotides
- Bulged bases
- 5VP2|1|1A|G|353, 5VP2|1|1A|A|354, 5VP2|1|1A|A|355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VP2_011 not in the Motif Atlas
- Homologous match to HL_9DFE_011
- Geometric discrepancy: 0.1449
- The information below is about HL_9DFE_011
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.4
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 16
Unit IDs
5VP2|1|1A|G|351
5VP2|1|1A|U|352
5VP2|1|1A|G|353
5VP2|1|1A|A|354
5VP2|1|1A|A|355
5VP2|1|1A|A|356
5VP2|1|1A|G|357
5VP2|1|1A|C|358
5VP2|1|1A|C|359
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1Y
- 50S ribosomal protein L24
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