5VP2 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5VP2_001 | 1/1A/58:67 | No text annotation | homologous HL_9DFE_001 HL_93438.2 | |
| HL_5VP2_002 | 1/1A/86:94 | No text annotation | homologous HL_9DFE_002 HL_77600.2 | |
| HL_5VP2_003 | 1/1A/121:126 | No text annotation | homologous HL_9DFE_003 HL_82710.2 | |
| HL_5VP2_004 | 1/1A/136:141 | No text annotation | homologous HL_9DFE_004 HL_71391.1 | |
| HL_5VP2_005 | 1/1A/183:190 | No text annotation | homologous HL_9DFE_005 HL_30068.2 | |
| HL_5VP2_006 | 1/1A/214:219 | No text annotation | homologous HL_9DFE_006 HL_53890.2 | |
| HL_5VP2_007 | 1/1A/235:241 | No text annotation | homologous HL_9DFE_007 HL_37369.2 | |
| HL_5VP2_008 | 1/1A/269:275 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_5VP2_009 | 1/1A/329:336 | T-loop with 1 bulged base | homologous HL_9DFE_009 HL_01609.3 | |
| HL_5VP2_010 | 1/1A/343:347 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_5VP2_011 | 1/1A/351:359 | T-loop with unstacked turn | homologous HL_9DFE_011 HL_27670.2 | |
| HL_5VP2_012 | 1/1A/409:419 | No text annotation | homologous HL_9DFE_012 HL_91503.7 | |
| HL_5VP2_013 | 1/1A/437:444 | No text annotation | homologous HL_9DFE_013 HL_30680.3 | |
| HL_5VP2_014 | 1/1A/488:493 | GNRA | homologous HL_5J7L_147 HL_37824.8 | |
| HL_5VP2_015 | 1/1A/513:518 | GNRA | homologous HL_9DFE_015 HL_37824.8 | |
| HL_5VP2_017 | 1/1A/589:598 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_016 HL_28252.9 | |
| HL_5VP2_018 | 1/1A/635:641 | No text annotation | homologous HL_9DFE_017 HL_42046.2 | |
| HL_5VP2_019 | 1/1A/654:659 | GNRA | homologous HL_9DFE_018 HL_37824.8 | |
| HL_5VP2_020 | 1/1A/666:672 | GNRA | homologous HL_9DFE_019 HL_37824.8 | |
| HL_5VP2_021 | 1/1A/759:766 | GNRA wlth tandem sheared | homologous HL_9DFE_020 HL_81538.2 | |
| HL_5VP2_022 | 1/1A/791:800 | No text annotation | homologous HL_9DFE_021 HL_88205.2 | |
| HL_5VP2_023 | 1/1A/826:832 | No text annotation | homologous HL_9DFE_022 HL_87954.2 | |
| HL_5VP2_024 | 1/1A/873:878 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_5VP2_237 | 1/1A/928:943 | No text annotation | ||
| HL_5VP2_025 | 1/1A/929:940 | No text annotation | ||
| HL_5VP2_026 | 1/1A/1000:1007 | GNRA | homologous HL_9DFE_025 HL_37824.8 | |
| HL_5VP2_027 | 1/1A/1024:1031 | No text annotation | homologous HL_9DFE_026 HL_42998.2 | |
| HL_5VP2_029 | 1/1A/1138:1145 | No text annotation | homologous HL_9DFE_028 NA | |
| HL_5VP2_030 | 1/1A/1217:1223 | No text annotation | homologous HL_9DFE_029 NA | |
| HL_5VP2_031 | 1/1A/1268:1273 | GNRA | homologous HL_9DFE_030 HL_37824.8 | |
| HL_5VP2_032 | 1/1A/1327:1335 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_28252.9 | |
| HL_5VP2_033 | 1/1A/1370:1376 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_032 HL_57176.2 | |
| HL_5VP2_034 | 1/1A/1409:1414 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_5VP2_035 | 1/1A/1435:1444 | No text annotation | homologous HL_9DFE_034 HL_81545.2 | |
| HL_5VP2_036 | 1/1A/1499:1506 | No text annotation | homologous HL_9DFE_035 HL_22622.1 | |
| HL_5VP2_037 | 1/1A/1538:1544 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_036 HL_57176.2 | |
| HL_5VP2_038 | 1/1A/1612:1615 | Mini UNCG | homologous HL_9DFE_037 HL_48778.2 | |
| HL_5VP2_039 | 1/1A/1658:1665 | No text annotation | homologous HL_9DFE_038 HL_89567.2 | |
| HL_5VP2_040 | 1/1A/1677:1682 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_039 HL_57176.2 | |
| HL_5VP2_041 | 1/1A/1738:1743 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_5VP2_042 | 1/1A/1765:1771 | GNRA | homologous HL_9DFE_041 HL_37824.8 | |
| HL_5VP2_043 | 1/1A/1783:1787 | No text annotation | homologous HL_9DFE_042 HL_80709.3 | |
| HL_5VP2_044 | 1/1A/1808:1818 | No text annotation | homologous HL_9DFE_043 HL_01962.2 | |
| HL_5VP2_045 | 1/1A/1837:1842 | GNRA | homologous HL_9DFE_044 HL_37824.8 | |
| HL_5VP2_046 | 1/1A/1895:1900 | GNRA | homologous HL_9DFE_045 HL_37824.8 | |
| HL_5VP2_224 | 1/1A/1932:1942 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_5VP2_048 | 1/1A/1971:1979 | No text annotation | homologous HL_9DFE_047 HL_20167.2 | |
| HL_5VP2_049 | 1/1A/2049:2058 | No text annotation | homologous HL_9DFE_048 HL_61996.3 | |
| HL_5VP2_050 | 1/1A/2165:2170 | UNCG | homologous HL_3U4M_001 HL_34617.5 | |
| HL_5VP2_051 | 1/1A/2226:2231 | No text annotation | homologous HL_9DFE_050 HL_32346.4 | |
| HL_5VP2_052 | 1/1A/2260:2268 | No text annotation | homologous HL_9DFE_051 HL_85367.2 | |
| HL_5VP2_053 | 1/1A/2276:2288 | No text annotation | homologous HL_9DFE_052 HL_91939.2 | |
| HL_5VP2_238 | 1/1A/2316:2324 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_5VP2_055 | 1/1A/2336:2343 | Pseudoknot geometry | homologous HL_9DFE_054 HL_93324.4 | |
| HL_5VP2_056 | 1/1A/2367:2374 | GNRA with extra cWW | homologous HL_9DFE_055 HL_04259.3 | |
| HL_5VP2_057 | 1/1A/2386:2391 | GNRA | homologous HL_9DFE_056 HL_37824.8 | |
| HL_5VP2_058 | 1/1A/2416:2425 | No text annotation | homologous HL_9DFE_057 HL_53454.2 | |
| HL_5VP2_059 | 1/1A/2483:2491 | No text annotation | homologous HL_9DFE_058 HL_32735.2 | |
| HL_5VP2_060 | 1/1A/2540:2547 | GNRA variation | homologous HL_9DFE_059 HL_31585.4 | |
| HL_5VP2_061 | 1/1A/2563:2569 | No text annotation | homologous HL_9DFE_060 HL_30068.2 | |
| HL_5VP2_062 | 1/1A/2606:2611 | GNRA | homologous HL_9DFE_061 HL_37824.8 | |
| HL_5VP2_063 | 1/1A/2670:2675 | GNRA | homologous HL_5J7L_197 HL_37824.8 | |
| HL_5VP2_064 | 1/1A/2713:2718 | Other HL | homologous HL_9DFE_063 HL_22584.6 | |
| HL_5VP2_065 | 1/1A/2758:2772 | No text annotation | homologous HL_9DFE_064 HL_74055.2 | |
| HL_5VP2_067 | 1/1A/2829:2837 | No text annotation | homologous HL_9DFE_065 HL_64690.6 | |
| HL_5VP2_068 | 1/1A/2866:2871 | GNRA | homologous HL_9DFE_066 HL_37824.8 | |
| HL_5VP2_225 | 1/1B/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_5VP2_069 | 1/1B/38:44 | No text annotation | geometric HL_8VTW_069 NA | |
| HL_5VP2_070 | 1/1B/86:91 | GNRA | homologous HL_9DFE_069 HL_37824.8 | |
| HL_5VP2_071 | 1/1a/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_5VP2_226 | 1/1a/158:163 | GNRA | homologous HL_6CZR_074 NA | |
| HL_5VP2_074 | 1/1a/189C:189H | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
| HL_5VP2_075 | 1/1a/201:216 | Mini UNCG | homologous HL_6CZR_234 NA | |
| HL_5VP2_076 | 1/1a/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_5VP2_077 | 1/1a/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_5VP2_078 | 1/1a/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_5VP2_079 | 1/1a/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_5VP2_080 | 1/1a/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_5VP2_081 | 1/1a/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_5VP2_082 | 1/1a/458:473 | GNRA | homologous HL_6CZR_083 NA | |
| HL_5VP2_227 | 1/1a/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.8 | |
| HL_5VP2_084 | 1/1a/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_5VP2_085 | 1/1a/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_5VP2_086 | 1/1a/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_5VP2_087 | 1/1a/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_5VP2_088 | 1/1a/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_5VP2_089 | 1/1a/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_5VP2_090 | 1/1a/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_5VP2_091 | 1/1a/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_5VP2_092 | 1/1a/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_5VP2_094 | 1/1a/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.8 | |
| HL_5VP2_095 | 1/1a/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_5VP2_096 | 1/1a/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_5VP2_097 | 1/1a/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_5VP2_098 | 1/1a/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_5VP2_099 | 1/1a/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_5VP2_100 | 1/1a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_5VP2_101 | 1/1a/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_5VP2_102 | 1/1a/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_5VP2_228 | 1/1w/31:39 | tRNA anticodon loop | homologous HL_6GSK_203 HL_06059.7 | |
| HL_5VP2_105 | 1/1w/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4YYE_003 HL_28252.9 | |
| HL_5VP2_106 | 1/1x/13:22 | tRNA D-loop | homologous HL_5AXM_001 HL_20811.4 | |
| HL_5VP2_107 | 1/1x/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.7 | |
| HL_5VP2_108 | 1/1x/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4V9Q_215 HL_28252.9 | |
| HL_5VP2_229 | 1/1y/31:39 | tRNA anticodon loop | homologous HL_6UGG_005 HL_83632.1 | |
| HL_5VP2_111 | 1/1y/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6PMO_005 NA | |
| HL_5VP2_112 | 1/2A/59:68 | No text annotation | homologous HL_9DFE_001 HL_93438.2 | |
| HL_5VP2_113 | 1/2A/87:95 | No text annotation | homologous HL_9DFE_002 HL_77600.2 | |
| HL_5VP2_114 | 1/2A/123:128 | No text annotation | homologous HL_9DFE_003 HL_82710.2 | |
| HL_5VP2_115 | 1/2A/139:142A | No text annotation | homologous HL_9DFE_004 HL_71391.1 | |
| HL_5VP2_117 | 1/2A/194:201 | No text annotation | homologous HL_9DFE_005 HL_30068.2 | |
| HL_5VP2_118 | 1/2A/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_5VP2_119 | 1/2A/246:252 | No text annotation | homologous HL_9DFE_007 HL_37369.2 | |
| HL_5VP2_120 | 1/2A/271I:271O | No text annotation | homologous HL_9DFE_008 NA | |
| HL_5VP2_121 | 1/2A/305:312 | T-loop with 1 bulged base | homologous HL_9DFE_009 HL_01609.3 | |
| HL_5VP2_122 | 1/2A/319:323 | No text annotation | geometric HL_8VTW_010 NA | |
| HL_5VP2_123 | 1/2A/327:335 | T-loop with unstacked turn | homologous HL_9DFE_011 HL_27670.2 | |
| HL_5VP2_230 | 1/2A/383:391 | No text annotation | ||
| HL_5VP2_125 | 1/2A/410:417 | No text annotation | homologous HL_9DFE_013 HL_30680.3 | |
| HL_5VP2_126 | 1/2A/462:467 | GNRA | homologous HL_9DFE_014 HL_37824.8 | |
| HL_5VP2_127 | 1/2A/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.8 | |
| HL_5VP2_129 | 1/2A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_016 HL_28252.9 | |
| HL_5VP2_130 | 1/2A/612:615 | No text annotation | homologous HL_9DFE_017 HL_42046.2 | |
| HL_5VP2_131 | 1/2A/629:634 | GNRA | homologous HL_9DFE_018 HL_37824.8 | |
| HL_5VP2_132 | 1/2A/641:647 | GNRA | homologous HL_9DFE_019 HL_37824.8 | |
| HL_5VP2_133 | 1/2A/712:719 | GNRA wlth tandem sheared | homologous HL_9DFE_020 HL_81538.2 | |
| HL_5VP2_134 | 1/2A/744:753 | No text annotation | homologous HL_9DFE_021 HL_88205.2 | |
| HL_5VP2_135 | 1/2A/779:785 | No text annotation | homologous HL_9DFE_022 HL_87954.2 | |
| HL_5VP2_136 | 1/2A/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_5VP2_137 | 1/2A/882:894 | No text annotation | ||
| HL_5VP2_138 | 1/2A/955:962 | GNRA | homologous HL_9DFE_025 HL_37824.8 | |
| HL_5VP2_139 | 1/2A/978:985 | No text annotation | homologous HL_9DFE_026 HL_42998.2 | |
| HL_5VP2_141 | 1/2A/1222:1227 | GNRA | homologous HL_9DFE_030 HL_37824.8 | |
| HL_5VP2_142 | 1/2A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_28252.9 | |
| HL_5VP2_143 | 1/2A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_57176.2 | |
| HL_5VP2_144 | 1/2A/1363:1368 | GNRA | homologous HL_9DFE_033 HL_37824.8 | |
| HL_5VP2_145 | 1/2A/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_5VP2_231 | 1/2A/1450:1461 | UNCG variation | geometric HL_5J7L_200 HL_08100.1 | |
| HL_5VP2_146 | 1/2A/1451:1459 | Mini UNCG with extended bulge | geometric HL_8VTW_036 NA | |
| HL_5VP2_147 | 1/2A/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_036 HL_57176.2 | |
| HL_5VP2_149 | 1/2A/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_5VP2_150 | 1/2A/1612:1619 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
| HL_5VP2_151 | 1/2A/1631:1635 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_039 HL_57176.2 | |
| HL_5VP2_152 | 1/2A/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_5VP2_153 | 1/2A/1720:1742 | GNRA | homologous HL_9DFE_041 HL_37824.8 | |
| HL_5VP2_154 | 1/2A/1752:1756 | No text annotation | homologous HL_9DFE_042 HL_80709.3 | |
| HL_5VP2_155 | 1/2A/1777:1787 | No text annotation | homologous HL_9DFE_043 HL_01962.2 | |
| HL_5VP2_156 | 1/2A/1806:1811 | GNRA | homologous HL_9DFE_044 HL_37824.8 | |
| HL_5VP2_157 | 1/2A/1864:1878 | GNRA | homologous HL_9DFE_045 HL_37824.8 | |
| HL_5VP2_232 | 1/2A/1910:1920 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_5VP2_159 | 1/2A/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_5VP2_160 | 1/2A/2027:2036 | No text annotation | homologous HL_9DFE_048 HL_61996.3 | |
| HL_5VP2_162 | 1/2A/2205:2219 | No text annotation | homologous HL_9DFE_050 HL_32346.4 | |
| HL_5VP2_163 | 1/2A/2248:2256 | No text annotation | homologous HL_9DFE_051 HL_85367.2 | |
| HL_5VP2_164 | 1/2A/2264:2276 | No text annotation | homologous HL_9DFE_052 HL_91939.2 | |
| HL_5VP2_165 | 1/2A/2303:2313 | No text annotation | homologous HL_9DFE_053 NA | |
| HL_5VP2_166 | 1/2A/2324:2331 | Pseudoknot geometry | homologous HL_9DFE_054 HL_93324.4 | |
| HL_5VP2_167 | 1/2A/2355:2362 | GNRA with extra cWW | homologous HL_9DFE_055 HL_04259.3 | |
| HL_5VP2_168 | 1/2A/2374:2379 | GNRA | homologous HL_9DFE_056 HL_37824.8 | |
| HL_5VP2_169 | 1/2A/2404:2413 | No text annotation | homologous HL_9DFE_057 HL_53454.2 | |
| HL_5VP2_170 | 1/2A/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_5VP2_171 | 1/2A/2528:2535 | GNRA variation | homologous HL_9DFE_059 HL_31585.4 | |
| HL_5VP2_172 | 1/2A/2551:2557 | No text annotation | homologous HL_9DFE_060 HL_30068.2 | |
| HL_5VP2_173 | 1/2A/2594:2599 | GNRA | homologous HL_9DFE_061 HL_37824.8 | |
| HL_5VP2_174 | 1/2A/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.8 | |
| HL_5VP2_175 | 1/2A/2701:2706 | Other HL | homologous HL_9DFE_063 HL_22584.6 | |
| HL_5VP2_176 | 1/2A/2745:2759 | No text annotation | homologous HL_9DFE_064 HL_74055.2 | |
| HL_5VP2_178 | 1/2A/2819:2827 | No text annotation | homologous HL_9DFE_065 HL_64690.6 | |
| HL_5VP2_179 | 1/2A/2856:2861 | GNRA | homologous HL_9DFE_066 HL_37824.8 | |
| HL_5VP2_180 | 1/2B/38:44 | No text annotation | homologous HL_9DFE_068 HL_47787.2 | |
| HL_5VP2_181 | 1/2B/86:91 | GNRA | homologous HL_7A0S_070 HL_37824.8 | |
| HL_5VP2_182 | 1/2a/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_5VP2_184 | 1/2a/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_5VP2_185 | 1/2a/189C:189H | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
| HL_5VP2_186 | 1/2a/201:216 | Mini UNCG | homologous HL_6CZR_234 NA | |
| HL_5VP2_187 | 1/2a/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_5VP2_188 | 1/2a/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_5VP2_189 | 1/2a/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_5VP2_190 | 1/2a/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_5VP2_191 | 1/2a/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_5VP2_192 | 1/2a/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_5VP2_193 | 1/2a/458:473 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
| HL_5VP2_233 | 1/2a/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.8 | |
| HL_5VP2_195 | 1/2a/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_5VP2_196 | 1/2a/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_5VP2_197 | 1/2a/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_5VP2_198 | 1/2a/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_5VP2_199 | 1/2a/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_5VP2_200 | 1/2a/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_5VP2_201 | 1/2a/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_5VP2_202 | 1/2a/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_5VP2_203 | 1/2a/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_5VP2_204 | 1/2a/1028:1033 | No text annotation | ||
| HL_5VP2_205 | 1/2a/1076:1081 | GNRA | homologous HL_6CZR_095 NA | |
| HL_5VP2_206 | 1/2a/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_5VP2_207 | 1/2a/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_5VP2_208 | 1/2a/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_5VP2_209 | 1/2a/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
| HL_5VP2_210 | 1/2a/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_5VP2_211 | 1/2a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_5VP2_212 | 1/2a/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_5VP2_234 | 1/2w/31:39 | tRNA anticodon loop | homologous HL_4YCO_002 HL_06059.7 | |
| HL_5VP2_235 | 1/2w/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3ZGZ_003 HL_28252.9 | |
| HL_5VP2_217 | 1/2x/13:22 | tRNA D-loop | homologous HL_7MRL_001 HL_20811.4 | |
| HL_5VP2_218 | 1/2x/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.7 | |
| HL_5VP2_219 | 1/2x/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4WT8_217 HL_28252.9 | |
| HL_5VP2_236 | 1/2y/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.7 | |
| HL_5VP2_222 | 1/2y/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6PMO_005 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5VP2_016 | No text annotation | ||
| HL_5VP2_223 | No text annotation | ||
| HL_5VP2_028 | No text annotation | ||
| HL_5VP2_047 | No text annotation | ||
| HL_5VP2_054 | No text annotation | ||
| HL_5VP2_066 | No text annotation | ||
| HL_5VP2_072 | No text annotation | ||
| HL_5VP2_073 | GNRA with extra near cWW | ||
| HL_5VP2_083 | No text annotation | ||
| HL_5VP2_093 | No text annotation | ||
| HL_5VP2_103 | No text annotation | ||
| HL_5VP2_104 | No text annotation | ||
| HL_5VP2_109 | tRNA D-loop | ||
| HL_5VP2_110 | tRNA D-loop | ||
| HL_5VP2_116 | No text annotation | ||
| HL_5VP2_124 | No text annotation | ||
| HL_5VP2_128 | No text annotation | ||
| HL_5VP2_140 | No text annotation | ||
| HL_5VP2_148 | No text annotation | ||
| HL_5VP2_158 | No text annotation | ||
| HL_5VP2_161 | UNCG | ||
| HL_5VP2_177 | No text annotation | ||
| HL_5VP2_183 | Externally structured | ||
| HL_5VP2_194 | No text annotation | ||
| HL_5VP2_213 | GNRA | ||
| HL_5VP2_214 | No text annotation | ||
| HL_5VP2_215 | No text annotation | ||
| HL_5VP2_216 | No text annotation | ||
| HL_5VP2_220 | tRNA D-loop | ||
| HL_5VP2_221 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5VP2_001 | 1/1A/24:30, 1/1A/535:541 | No text annotation | homologous IL_9DFE_001 IL_04021.2 | |
| IL_5VP2_002 | 1/1A/36:37, 1/1A/468:470 | Single bulged A | homologous IL_9DFE_002 IL_31462.7 | |
| IL_5VP2_003 | 1/1A/42:43, 1/1A/461:463 | Minor groove platform | homologous IL_7A0S_003 IL_51454.3 | |
| IL_5VP2_004 | 1/1A/80:84, 1/1A/96:103 | Kink-turn | homologous IL_9DFE_004 IL_01488.3 | |
| IL_5VP2_005 | 1/1A/172:173, 1/1A/201:203 | Single stack bend | homologous IL_9DFE_005 IL_90729.1 | |
| IL_5VP2_006 | 1/1A/177:183, 1/1A/190:197 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9DFE_006 IL_04346.10 | |
| IL_5VP2_007 | 1/1A/228:234, 1/1A/242:247 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9DFE_007 IL_26307.2 | |
| IL_5VP2_008 | 1/1A/291:292, 1/1A/392:394 | Major groove platform | homologous IL_9DFE_008 IL_48076.6 | |
| IL_5VP2_010 | 1/1A/304:308, 1/1A/381:384 | No text annotation | homologous IL_9DFE_009 IL_99646.2 | |
| IL_5VP2_011 | 1/1A/312:314, 1/1A/374:377 | No text annotation | homologous IL_9DFE_010 IL_85599.2 | |
| IL_5VP2_012 | 1/1A/317:319, 1/1A/367:371 | No text annotation | homologous IL_9DFE_011 IL_69440.3 | |
| IL_5VP2_013 | 1/1A/507:510, 1/1A/521:534 | No text annotation | geometric IL_8VTW_013 NA | |
| IL_5VP2_014 | 1/1A/587:589, 1/1A/598:600 | Isolated non-canonical cWW pair | homologous IL_9DFE_013 IL_07785.1 | |
| IL_5VP2_015 | 1/1A/629:633, 1/1A/643:647 | No text annotation | homologous IL_9DFE_014 IL_66798.2 | |
| IL_5VP2_016 | 1/1A/719:721, 1/1A/853:855 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_5VP2_017 | 1/1A/721:725, 1/1A/846:853 | No text annotation | homologous IL_9DFE_016 IL_54041.2 | |
| IL_5VP2_018 | 1/1A/744:745, 1/1A/810:812 | Single bulged A | homologous IL_9DFE_017 IL_31462.7 | |
| IL_5VP2_019 | 1/1A/749:750, 1/1A/775:777 | Single bulged G | homologous IL_5J7L_262 IL_00225.14 | |
| IL_5VP2_020 | 1/1A/750:754, 1/1A/771:775 | Triple sheared | homologous IL_9DFE_019 IL_50730.2 | |
| IL_5VP2_021 | 1/1A/785:788, 1/1A/803:805 | No text annotation | homologous IL_9DFE_020 IL_51387.3 | |
| IL_5VP2_022 | 1/1A/822:824, 1/1A/834:838 | No text annotation | homologous IL_9DFE_021 IL_06549.2 | |
| IL_5VP2_023 | 1/1A/884:885, 1/1A/985:987 | Single stack bend | homologous IL_9DFE_022 IL_90729.1 | |
| IL_5VP2_024 | 1/1A/891:893, 1/1A/976:979 | Isolated cWH basepair | geometric IL_8VTW_024 NA | |
| IL_5VP2_342 | 1/1A/891:897, 1/1A/973:979 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_5VP2_025 | 1/1A/893:897, 1/1A/973:976 | No text annotation | geometric IL_8VTW_025 NA | |
| IL_5VP2_343 | 1/1A/905:909, 1/1A/961:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_9DFE_026 IL_38862.4 | |
| IL_5VP2_027 | 1/1A/909:910, 1/1A/959:961 | Minor groove platform | homologous IL_9DFE_027 IL_51454.3 | |
| IL_5VP2_028 | 1/1A/911:915, 1/1A/955:958 | C-loop with bulged stacked A's | homologous IL_9DFE_028 IL_26222.2 | |
| IL_5VP2_029 | 1/1A/917:919, 1/1A/951:953 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_5VP2_030 | 1/1A/922:924, 1/1A/945:948 | No text annotation | geometric IL_8VTW_030 NA | |
| IL_5VP2_344 | 1/1A/922:927, 1/1A/944:948 | No text annotation | ||
| IL_5VP2_031 | 1/1A/924:927, 1/1A/944:945 | No text annotation | ||
| IL_5VP2_032 | 1/1A/928:929, 1/1A/940:943 | Major groove platform | geometric IL_8DP3_001 IL_02555.1 | |
| IL_5VP2_033 | 1/1A/997:999, 1/1A/1008:1010 | Isolated non-canonical cWW pair | homologous IL_9DFE_033 IL_87907.2 | |
| IL_5VP2_034 | 1/1A/1040:1042, 1/1A/1205:1206 | Single bulged C | homologous IL_9DFE_034 IL_61258.15 | |
| IL_5VP2_035 | 1/1A/1044:1048, 1/1A/1199:1203 | UAA/GAN | homologous IL_9DFE_035 IL_38507.2 | |
| IL_5VP2_036 | 1/1A/1050:1057, 1/1A/1196:1197 | SSU/LSU pseudoknot | homologous IL_9DFE_036 IL_41203.4 | |
| IL_5VP2_037 | 1/1A/1057:1059, 1/1A/1195:1196 | Single bulged U | homologous IL_9DFE_037 IL_89505.4 | |
| IL_5VP2_038 | 1/1A/1064:1070, 1/1A/1185:1190 | No text annotation | homologous IL_9DFE_038 IL_57188.5 | |
| IL_5VP2_039 | 1/1A/1070:1076, 1/1A/1170:1185 | No text annotation | homologous IL_9DFE_039 IL_50715.3 | |
| IL_5VP2_040 | 1/1A/1077:1080, 1/1A/1167:1169 | Isolated non-canonical cWW pair | homologous IL_9DFE_040 IL_57744.1 | |
| IL_5VP2_041 | 1/1A/1089:1097, 1/1A/1154:1158 | Kink-turn | homologous IL_9DFE_041 IL_99692.2 | |
| IL_5VP2_042 | 1/1A/1133:1137, 1/1A/1146:1148 | No text annotation | homologous IL_9DFE_043 NA | |
| IL_5VP2_043 | 1/1A/1241:1243, 1/1A/1293:1296 | No text annotation | homologous IL_9DFE_044 IL_42997.3 | |
| IL_5VP2_044 | 1/1A/1247:1251, 1/1A/1286:1289 | No text annotation | homologous IL_9DFE_045 IL_68574.4 | |
| IL_5VP2_045 | 1/1A/1253:1260, 1/1A/1280:1284 | Kink-turn | homologous IL_9DFE_046 IL_70923.9 | |
| IL_5VP2_046 | 1/1A/1264:1266, 1/1A/1275:1276 | Single bulged A | homologous IL_9DFE_047 IL_31462.7 | |
| IL_5VP2_047 | 1/1A/1308:1315, 1/1A/2033:2039 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9DFE_048 IL_04346.10 | |
| IL_5VP2_048 | 1/1A/1356:1359, 1/1A/1649:1650 | Major groove platform; stack outside cWW | geometric IL_8VTW_049 NA | |
| IL_5VP2_049 | 1/1A/1365:1369, 1/1A/1377:1379 | C-loop | homologous IL_9DFE_050 IL_63596.11 | |
| IL_5VP2_050 | 1/1A/1397:1401, 1/1A/1422:1426 | UAA/GAN | homologous IL_9DFE_051 IL_38507.2 | |
| IL_5VP2_051 | 1/1A/1403:1407, 1/1A/1416:1420 | tSH-tHW-tHS | homologous IL_9DFE_052 IL_17136.7 | |
| IL_5VP2_052 | 1/1A/1461:1462, 1/1A/1629:1633 | No text annotation | homologous IL_9DFE_053 IL_00881.1 | |
| IL_5VP2_053 | 1/1A/1463:1467, 1/1A/1624:1628 | UAA/GAN | homologous IL_9DFE_054 IL_38507.2 | |
| IL_5VP2_054 | 1/1A/1479:1481, 1/1A/1604:1607 | No text annotation | homologous IL_9DFE_055 IL_67095.2 | |
| IL_5VP2_055 | 1/1A/1483:1486, 1/1A/1598:1602 | No text annotation | homologous IL_9DFE_056 IL_99646.2 | |
| IL_5VP2_056 | 1/1A/1495:1497, 1/1A/1509:1510 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
| IL_5VP2_057 | 1/1A/1498:1499, 1/1A/1506:1508 | Single bulged A | homologous IL_9DFE_058 IL_31462.7 | |
| IL_5VP2_058 | 1/1A/1516:1520, 1/1A/1566:1569 | UAA/GAN variation | homologous IL_9DFE_059 IL_23774.1 | |
| IL_5VP2_059 | 1/1A/1528:1529, 1/1A/1552:1558 | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
| IL_5VP2_060 | 1/1A/1535:1537, 1/1A/1545:1546 | Single bulged A | homologous IL_9DFE_061 IL_31462.7 | |
| IL_5VP2_061 | 1/1A/1572:1576, 1/1A/1587:1593 | No text annotation | homologous IL_9DFE_062 IL_09044.1 | |
| IL_5VP2_062 | 1/1A/1698:1703, 1/1A/2026:2028 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_5VP2_063 | 1/1A/1710:1712, 1/1A/2017:2019 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_5VP2_064 | 1/1A/1713:1716, 1/1A/2015:2016 | Major groove platform; stack outside cWW | geometric IL_8VTW_065 NA | |
| IL_5VP2_345 | 1/1A/1713:1721, 1/1A/2012:2016 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_5VP2_065 | 1/1A/1716:1721, 1/1A/2012:2015 | No text annotation | geometric IL_8VTW_066 NA | |
| IL_5VP2_066 | 1/1A/1733:1738, 1/1A/1743:1749 | No text annotation | homologous IL_9DFE_068 IL_47346.2 | |
| IL_5VP2_067 | 1/1A/1801:1802, 1/1A/2002:2004 | Single bulged A | homologous IL_9DFE_069 IL_31462.7 | |
| IL_5VP2_068 | 1/1A/1829:1835, 1/1A/1844:1852 | No text annotation | homologous IL_9DFE_070 IL_17069.5 | |
| IL_5VP2_069 | 1/1A/1868:1871, 1/1A/1924:1925 | Minor groove platform, major groove intercalation | homologous IL_9DFE_071 IL_95583.2 | |
| IL_5VP2_070 | 1/1A/1872:1873, 1/1A/1920:1923 | No text annotation | homologous IL_9DFE_072 IL_66635.5 | |
| IL_5VP2_071 | 1/1A/1877:1880, 1/1A/1915:1916 | Minor groove platform | homologous IL_9DFE_073 IL_95583.2 | |
| IL_5VP2_072 | 1/1A/1882:1886, 1/1A/1909:1913 | UAA/GAN with extra stack | homologous IL_9DFE_074 IL_89021.2 | |
| IL_5VP2_073 | 1/1A/1887:1891, 1/1A/1904:1908 | Triple sheared | homologous IL_9DFE_075 IL_50730.2 | |
| IL_5VP2_074 | 1/1A/1955:1956, 1/1A/1986:1989 | No text annotation | geometric IL_8VTW_075 NA | |
| IL_5VP2_075 | 1/1A/1956:1967, 1/1A/1983:1986 | No text annotation | homologous IL_9DFE_077 IL_42218.2 | |
| IL_5VP2_076 | 1/1A/2072:2074, 1/1A/2629:2630 | Major groove platform | homologous IL_9DFE_078 IL_48076.6 | |
| IL_5VP2_077 | 1/1A/2076:2079, 1/1A/2623:2627 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_5VP2_078 | 1/1A/2089:2091, 1/1A/2454:2455 | Single bulged U | homologous IL_9DFE_080 IL_89505.4 | |
| IL_5VP2_079 | 1/1A/2092:2093, 1/1A/2450:2453 | Minor groove platform | homologous IL_4WF9_081 IL_51454.3 | |
| IL_5VP2_080 | 1/1A/2103:2105, 1/1A/2248:2251 | No text annotation | homologous IL_9DFE_082 IL_85599.2 | |
| IL_5VP2_081 | 1/1A/2107:2109, 1/1A/2244:2246 | Isolated non-canonical cWW pair | homologous IL_9DFE_083 IL_28037.2 | |
| IL_5VP2_082 | 1/1A/2130:2132, 1/1A/2201:2203 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_28037.2 | |
| IL_5VP2_083 | 1/1A/2132:2142, 1/1A/2200:2201 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_5VP2_084 | 1/1A/2146:2149, 1/1A/2183:2196 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_5VP2_367 | 1/1A/2151:2158, 1/1A/2177:2181 | Kink-turn | homologous IL_3U4M_004 IL_70923.9 | |
| IL_5VP2_086 | 1/1A/2309:2311, 1/1A/2329:2333 | No text annotation | homologous IL_9DFE_088 IL_61476.2 | |
| IL_5VP2_087 | 1/1A/2362:2365, 1/1A/2376:2379 | Double sheared | homologous IL_9DFE_089 IL_09705.15 | |
| IL_5VP2_088 | 1/1A/2413:2415, 1/1A/2426:2427 | Major groove platform | homologous IL_9DFE_090 IL_48076.6 | |
| IL_5VP2_089 | 1/1A/2465:2466, 1/1A/2510:2512 | Single stack bend | homologous IL_9DFE_091 IL_26793.1 | |
| IL_5VP2_090 | 1/1A/2466:2467, 1/1A/2508:2510 | Major groove platform | homologous IL_9DFE_092 IL_48076.6 | |
| IL_5VP2_346 | 1/1A/2469:2471, 1/1A/2505:2506 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_5VP2_092 | 1/1A/2471:2473, 1/1A/2501:2505 | No text annotation | homologous IL_9DFE_094 IL_51387.3 | |
| IL_5VP2_093 | 1/1A/2478:2482, 1/1A/2492:2496 | Double sheared with non-canonical cWW | homologous IL_9DFE_095 IL_17948.2 | |
| IL_5VP2_094 | 1/1A/2519:2520, 1/1A/2592:2594 | No text annotation | homologous IL_9DFE_096 IL_07039.3 | |
| IL_5VP2_095 | 1/1A/2522:2524, 1/1A/2586:2590 | Isolated non-canonical cWW with bulges | homologous IL_9DFE_097 IL_07785.1 | |
| IL_5VP2_096 | 1/1A/2524:2525, 1/1A/2583:2586 | No text annotation | homologous IL_9DFE_098 IL_42626.2 | |
| IL_5VP2_097 | 1/1A/2534:2535, 1/1A/2552:2555 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_5VP2_099 | 1/1A/2603:2604, 1/1A/2613:2615 | Single bulged A | homologous IL_5J7L_344 IL_31462.7 | |
| IL_5VP2_100 | 1/1A/2648:2652, 1/1A/2787:2795 | No text annotation | homologous IL_9DFE_101 IL_04638.3 | |
| IL_5VP2_101 | 1/1A/2664:2670, 1/1A/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_5VP2_102 | 1/1A/2692:2696, 1/1A/2738:2740 | C-loop | homologous IL_9DFE_103 IL_63596.11 | |
| IL_5VP2_103 | 1/1A/2699:2703, 1/1A/2731:2735 | UAA/GAN related, with intercalation | homologous IL_9DFE_104 IL_23774.1 | |
| IL_5VP2_104 | 1/1A/2707:2708, 1/1A/2723:2727 | No text annotation | homologous IL_9DFE_105 IL_42626.2 | |
| IL_5VP2_105 | 1/1A/2750:2755, 1/1A/2775:2780 | UAA/GAN with extra cWW | homologous IL_9DFE_106 IL_49767.8 | |
| IL_5VP2_106 | 1/1A/2848:2849, 1/1A/2888:2890 | Major groove intercalation | homologous IL_9DFE_107 IL_61258.15 | |
| IL_5VP2_107 | 1/1A/2853:2856, 1/1A/2880:2884 | No text annotation | homologous IL_9DFE_108 IL_75294.1 | |
| IL_5VP2_108 | 1/1A/2857:2862, 1/1A/2875:2879 | No text annotation | homologous IL_9DFE_109 IL_70411.2 | |
| IL_5VP2_109 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation | homologous IL_9DFE_110 IL_31462.7 | |
| IL_5VP2_110 | 1/1B/23:28, 1/1B/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_5VP2_368 | 1/1B/30:31, 1/1B/51:54 | No text annotation | homologous IL_9DFE_112 IL_68140.4 | |
| IL_5VP2_112 | 1/1B/34:38, 1/1B/44:48 | No text annotation | homologous IL_9DFE_113 IL_58103.11 | |
| IL_5VP2_113 | 1/1B/71:79, 1/1B/98:106 | Bacterial 5S Loop E | homologous IL_9DFE_114 IL_56455.6 | |
| IL_5VP2_114 | 1/1a/30:32, 1/1a/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_5VP2_115 | 1/1a/44:45, 1/1a/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_5VP2_116 | 1/1a/47:52, 1/1a/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_5VP2_117 | 1/1a/54:56, 1/1a/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.3 | |
| IL_5VP2_118 | 1/1a/63:66, 1/1a/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_5VP2_119 | 1/1a/67:69, 1/1a/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_5VP2_120 | 1/1a/129:131, 1/1a/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_5VP2_121 | 1/1a/132:136, 1/1a/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_5VP2_369 | 1/1a/148:153, 1/1a/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_5VP2_123 | 1/1a/186:188, 1/1a/189L:191 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
| IL_5VP2_124 | 1/1a/242:247, 1/1a/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_5VP2_125 | 1/1a/249:252, 1/1a/274:275 | No text annotation | geometric IL_5J7L_015 IL_47074.2 | |
| IL_5VP2_126 | 1/1a/292:293, 1/1a/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_5VP2_127 | 1/1a/367:369, 1/1a/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_5VP2_370 | 1/1a/371:375, 1/1a/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_5VP2_129 | 1/1a/375:376, 1/1a/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
| IL_5VP2_130 | 1/1a/409:416, 1/1a/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_5VP2_131 | 1/1a/446:450, 1/1a/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_5VP2_132 | 1/1a/450:455, 1/1a/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_5VP2_133 | 1/1a/504:511, 1/1a/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_5VP2_134 | 1/1a/515:521, 1/1a/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_5VP2_135 | 1/1a/569:575, 1/1a/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_5VP2_136 | 1/1a/580:584, 1/1a/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_5VP2_137 | 1/1a/594:596, 1/1a/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_5VP2_138 | 1/1a/597:598, 1/1a/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_5VP2_139 | 1/1a/605:612, 1/1a/628:633 | No text annotation | homologous IL_6CZR_408 NA | |
| IL_5VP2_140 | 1/1a/654:655, 1/1a/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_5VP2_141 | 1/1a/657:658, 1/1a/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_5VP2_142 | 1/1a/662:666, 1/1a/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_5VP2_349 | 1/1a/673:677, 1/1a/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_5VP2_144 | 1/1a/683:688, 1/1a/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_5VP2_145 | 1/1a/774:778, 1/1a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_5VP2_146 | 1/1a/779:783, 1/1a/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_5VP2_147 | 1/1a/887:894, 1/1a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_5VP2_148 | 1/1a/922:923, 1/1a/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_5VP2_149 | 1/1a/925:927, 1/1a/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_5VP2_150 | 1/1a/933:935, 1/1a/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_5VP2_151 | 1/1a/953:954, 1/1a/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_5VP2_152 | 1/1a/993:997, 1/1a/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_5VP2_153 | 1/1a/1048:1050, 1/1a/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_5VP2_155 | 1/1a/1052:1056, 1/1a/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_5VP2_156 | 1/1a/1057:1058, 1/1a/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_5VP2_157 | 1/1a/1060:1061, 1/1a/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_5VP2_158 | 1/1a/1061:1063, 1/1a/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_5VP2_159 | 1/1a/1124:1127, 1/1a/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_5VP2_160 | 1/1a/1129:1132, 1/1a/1142:1143 | Minor groove platform | homologous IL_4LFB_049 IL_15052.4 | |
| IL_5VP2_161 | 1/1a/1158:1161, 1/1a/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_5VP2_162 | 1/1a/1247:1253, 1/1a/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_5VP2_163 | 1/1a/1255:1258, 1/1a/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_5VP2_164 | 1/1a/1259:1260, 1/1a/1274:1276 | Not an internal loop | homologous IL_4LFB_053 NA | |
| IL_5VP2_165 | 1/1a/1260:1262, 1/1a/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_51454.3 | |
| IL_5VP2_166 | 1/1a/1303:1308, 1/1a/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_5VP2_167 | 1/1a/1399:1401, 1/1a/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_5VP2_350 | 1/1a/1401:1404, 1/1a/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_5VP2_351 | 1/1a/1405:1407, 1/1a/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_5VP2_352 | 1/1a/1407:1409, 1/1a/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_5VP2_170 | 1/1a/1412:1414, 1/1a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_5VP2_171 | 1/1a/1416:1419, 1/1a/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_5VP2_172 | 1/1a/1431:1435, 1/1a/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_5VP2_173 | 1/1a/1435:1437, 1/1a/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_5VP2_174 | 1/1a/1440:1443, 1/1a/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_5VP2_175 | 1/2A/24:30, 1/2A/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_5VP2_176 | 1/2A/36:37, 1/2A/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.7 | |
| IL_5VP2_177 | 1/2A/42:43, 1/2A/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_51454.3 | |
| IL_5VP2_178 | 1/2A/81:85, 1/2A/97:105 | Kink-turn | homologous IL_9DFE_004 IL_01488.3 | |
| IL_5VP2_179 | 1/2A/183:184, 1/2A/212:214 | Single stack bend | homologous IL_9DFE_005 IL_90729.1 | |
| IL_5VP2_180 | 1/2A/188:194, 1/2A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9DFE_006 IL_04346.10 | |
| IL_5VP2_181 | 1/2A/239:245, 1/2A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9DFE_007 IL_26307.2 | |
| IL_5VP2_353 | 1/2A/272:272, 1/2A/363:364 | Major groove platform | homologous IL_9DFE_008 IL_48076.6 | |
| IL_5VP2_183 | 1/2A/272J:279, 1/2A/361:363 | No text annotation | ||
| IL_5VP2_184 | 1/2A/280:284, 1/2A/357:360 | No text annotation | homologous IL_9DFE_009 IL_99646.2 | |
| IL_5VP2_185 | 1/2A/288:290, 1/2A/350:353 | No text annotation | homologous IL_9DFE_010 IL_85599.2 | |
| IL_5VP2_186 | 1/2A/293:295, 1/2A/343:347 | No text annotation | homologous IL_9DFE_011 IL_69440.3 | |
| IL_5VP2_187 | 1/2A/481:484, 1/2A/496:509 | No text annotation | geometric IL_8VTW_013 NA | |
| IL_5VP2_188 | 1/2A/564:566, 1/2A/575:577 | Isolated non-canonical cWW pair | homologous IL_9DFE_013 IL_07785.1 | |
| IL_5VP2_189 | 1/2A/606:610, 1/2A/618:622 | No text annotation | homologous IL_9DFE_014 IL_66798.2 | |
| IL_5VP2_190 | 1/2A/672:674, 1/2A/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_5VP2_191 | 1/2A/674:678, 1/2A/799:806 | No text annotation | homologous IL_9DFE_016 IL_54041.2 | |
| IL_5VP2_192 | 1/2A/697:698, 1/2A/763:765 | Single bulged A | homologous IL_4WF9_022 IL_31462.7 | |
| IL_5VP2_193 | 1/2A/702:703, 1/2A/728:730 | Single bulged G | homologous IL_9DFE_018 IL_00225.14 | |
| IL_5VP2_194 | 1/2A/703:707, 1/2A/724:728 | Triple sheared | homologous IL_9DFE_019 IL_50730.2 | |
| IL_5VP2_195 | 1/2A/738:741, 1/2A/756:758 | No text annotation | homologous IL_9DFE_020 IL_51387.3 | |
| IL_5VP2_196 | 1/2A/775:777, 1/2A/787:791 | No text annotation | homologous IL_9DFE_021 IL_06549.2 | |
| IL_5VP2_197 | 1/2A/837:838, 1/2A/940:942 | Single stack bend | homologous IL_9DFE_022 IL_90729.1 | |
| IL_5VP2_198 | 1/2A/844:846, 1/2A/931:934 | Other IL | homologous IL_9DFE_023 IL_44465.1 | |
| IL_5VP2_354 | 1/2A/844:850, 1/2A/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_5VP2_199 | 1/2A/846:850, 1/2A/927:931 | No text annotation | geometric IL_8VTW_025 NA | |
| IL_5VP2_200 | 1/2A/857:862, 1/2A/915:920 | No text annotation | ||
| IL_5VP2_355 | 1/2A/858:863, 1/2A/913:919 | No text annotation | ||
| IL_5VP2_201 | 1/2A/862:863, 1/2A/913:915 | Minor groove platform | geometric IL_4V9F_034 IL_51454.3 | |
| IL_5VP2_202 | 1/2A/864:868, 1/2A/909:912 | C-loop | homologous IL_4WF9_033 IL_26222.2 | |
| IL_5VP2_203 | 1/2A/874:881, 1/2A/895:903 | No text annotation | ||
| IL_5VP2_204 | 1/2A/952:954, 1/2A/963:965 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_87907.2 | |
| IL_5VP2_205 | 1/2A/994:996, 1/2A/1159:1160 | Single bulged C | homologous IL_7A0S_032 IL_61258.15 | |
| IL_5VP2_206 | 1/2A/998:1002, 1/2A/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_5VP2_207 | 1/2A/1004:1011, 1/2A/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_5VP2_208 | 1/2A/1011:1013, 1/2A/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_5VP2_209 | 1/2A/1018:1024, 1/2A/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_5VP2_210 | 1/2A/1024:1030, 1/2A/1124:1140 | No text annotation | homologous IL_9DFE_039 IL_50715.3 | |
| IL_5VP2_211 | 1/2A/1031:1034, 1/2A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_9DFE_040 IL_57744.1 | |
| IL_5VP2_212 | 1/2A/1196:1198, 1/2A/1247:1250 | No text annotation | homologous IL_9DFE_044 IL_42997.3 | |
| IL_5VP2_213 | 1/2A/1202:1206, 1/2A/1240:1243 | No text annotation | homologous IL_9DFE_045 IL_68574.4 | |
| IL_5VP2_214 | 1/2A/1208:1215, 1/2A/1234:1238 | Kink-turn | homologous IL_9DFE_046 IL_70923.9 | |
| IL_5VP2_215 | 1/2A/1219:1221, 1/2A/1229:1230 | Single bulged A | homologous IL_9DFE_047 IL_31462.7 | |
| IL_5VP2_216 | 1/2A/1262:1269, 1/2A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9DFE_048 IL_04346.10 | |
| IL_5VP2_217 | 1/2A/1310:1313, 1/2A/1603:1604 | Major groove platform; stack outside cWW | geometric IL_8VTW_049 NA | |
| IL_5VP2_218 | 1/2A/1319:1323, 1/2A/1331:1333 | C-loop | homologous IL_9DFE_050 IL_63596.11 | |
| IL_5VP2_219 | 1/2A/1351:1355, 1/2A/1376:1380 | UAA/GAN | homologous IL_9DFE_051 IL_38507.2 | |
| IL_5VP2_220 | 1/2A/1357:1361, 1/2A/1370:1374 | tSH-tHW-tHS | homologous IL_9DFE_052 IL_17136.7 | |
| IL_5VP2_221 | 1/2A/1415:1416, 1/2A/1582:1587 | No text annotation | homologous IL_9DFE_053 IL_00881.1 | |
| IL_5VP2_222 | 1/2A/1417:1421, 1/2A/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_5VP2_223 | 1/2A/1433:1435, 1/2A/1557:1560 | No text annotation | homologous IL_9DFE_055 IL_67095.2 | |
| IL_5VP2_224 | 1/2A/1437:1440, 1/2A/1551:1555 | No text annotation | homologous IL_9DFE_056 IL_99646.2 | |
| IL_5VP2_225 | 1/2A/1448:1450, 1/2A/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
| IL_5VP2_226 | 1/2A/1450A:1451, 1/2A/1459:1461 | Single bulged A | homologous IL_9DFE_058 IL_31462.7 | |
| IL_5VP2_227 | 1/2A/1469:1473, 1/2A/1518:1523 | UAA/GAN variation | homologous IL_9DFE_059 IL_23774.1 | |
| IL_5VP2_228 | 1/2A/1481:1482, 1/2A/1506:1510 | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
| IL_5VP2_229 | 1/2A/1489:1491, 1/2A/1499:1500 | Single bulged A | homologous IL_9DFE_061 IL_31462.7 | |
| IL_5VP2_230 | 1/2A/1526:1529, 1/2A/1540:1546 | No text annotation | homologous IL_9DFE_062 IL_09044.1 | |
| IL_5VP2_231 | 1/2A/1651:1656, 1/2A/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_5VP2_232 | 1/2A/1663:1665, 1/2A/1995:1997 | No text annotation | homologous IL_9DFE_064 IL_67095.2 | |
| IL_5VP2_233 | 1/2A/1666:1669, 1/2A/1993:1994 | Major groove platform; stack outside cWW | geometric IL_8VTW_065 NA | |
| IL_5VP2_358 | 1/2A/1666:1674, 1/2A/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_5VP2_234 | 1/2A/1669:1674, 1/2A/1990:1993 | No text annotation | geometric IL_8VTW_066 NA | |
| IL_5VP2_235 | 1/2A/1686:1691, 1/2A/1696:1702 | No text annotation | homologous IL_9DFE_068 IL_47346.2 | |
| IL_5VP2_236 | 1/2A/1770:1771, 1/2A/1980:1982 | Single bulged A | homologous IL_9DFE_069 IL_31462.7 | |
| IL_5VP2_237 | 1/2A/1798:1804, 1/2A/1813:1821 | No text annotation | homologous IL_9DFE_070 IL_17069.5 | |
| IL_5VP2_238 | 1/2A/1837:1840, 1/2A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_9DFE_071 IL_95583.2 | |
| IL_5VP2_239 | 1/2A/1841:1842, 1/2A/1898:1901 | No text annotation | homologous IL_9DFE_072 IL_66635.5 | |
| IL_5VP2_240 | 1/2A/1846:1849, 1/2A/1893:1894 | Minor groove platform | homologous IL_9DFE_073 IL_95583.2 | |
| IL_5VP2_241 | 1/2A/1851:1855, 1/2A/1887:1891 | UAA/GAN with extra stack | homologous IL_9DFE_074 IL_89021.2 | |
| IL_5VP2_242 | 1/2A/1856:1860, 1/2A/1882:1886 | Triple sheared | homologous IL_9DFE_075 IL_50730.2 | |
| IL_5VP2_243 | 1/2A/1933:1934, 1/2A/1964:1967 | No text annotation | geometric IL_8VTW_075 NA | |
| IL_5VP2_244 | 1/2A/1934:1945, 1/2A/1961:1964 | No text annotation | homologous IL_9DFE_077 IL_42218.2 | |
| IL_5VP2_245 | 1/2A/2050:2052, 1/2A/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_5VP2_246 | 1/2A/2054:2057, 1/2A/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_5VP2_247 | 1/2A/2067:2069, 1/2A/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_5VP2_248 | 1/2A/2070:2071, 1/2A/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_5VP2_249 | 1/2A/2081:2083, 1/2A/2236:2239 | No text annotation | homologous IL_9DFE_082 IL_85599.2 | |
| IL_5VP2_250 | 1/2A/2085:2087, 1/2A/2232:2234 | Isolated non-canonical cWW pair | homologous IL_9DFE_083 IL_28037.2 | |
| IL_5VP2_372 | 1/2A/2108:2110, 1/2A/2179:2181 | No text annotation | homologous IL_9DFE_084 NA | |
| IL_5VP2_252 | 1/2A/2110:2120, 1/2A/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_5VP2_253 | 1/2A/2124:2128, 1/2A/2160:2174 | No text annotation | ||
| IL_5VP2_254 | 1/2A/2129:2136, 1/2A/2155:2159 | Kink-turn | homologous IL_3U4M_004 IL_70923.9 | |
| IL_5VP2_255 | 1/2A/2297:2299, 1/2A/2317:2321 | No text annotation | homologous IL_9DFE_088 IL_61476.2 | |
| IL_5VP2_256 | 1/2A/2350:2353, 1/2A/2364:2367 | Double sheared | homologous IL_9DFE_089 IL_09705.15 | |
| IL_5VP2_257 | 1/2A/2401:2403, 1/2A/2414:2415 | Major groove platform | homologous IL_9DFE_090 IL_48076.6 | |
| IL_5VP2_258 | 1/2A/2453:2454, 1/2A/2498:2500 | Single stack bend | homologous IL_9DFE_091 IL_26793.1 | |
| IL_5VP2_259 | 1/2A/2454:2455, 1/2A/2496:2498 | Major groove platform | homologous IL_9DFE_092 IL_48076.6 | |
| IL_5VP2_260 | 1/2A/2457:2459, 1/2A/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_5VP2_261 | 1/2A/2459:2461, 1/2A/2489:2493 | No text annotation | homologous IL_9DFE_094 IL_51387.3 | |
| IL_5VP2_262 | 1/2A/2466:2470, 1/2A/2480:2484 | Double sheared with non-canonical cWW | homologous IL_9DFE_095 IL_17948.2 | |
| IL_5VP2_263 | 1/2A/2507:2508, 1/2A/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_5VP2_264 | 1/2A/2510:2512, 1/2A/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_5VP2_265 | 1/2A/2512:2513, 1/2A/2571:2574 | No text annotation | homologous IL_9DFE_098 IL_42626.2 | |
| IL_5VP2_266 | 1/2A/2522:2523, 1/2A/2540:2543 | No text annotation | homologous IL_9DFE_099 IL_02555.1 | |
| IL_5VP2_268 | 1/2A/2591:2592, 1/2A/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.7 | |
| IL_5VP2_269 | 1/2A/2636:2640, 1/2A/2774:2782 | No text annotation | homologous IL_9DFE_101 IL_04638.3 | |
| IL_5VP2_270 | 1/2A/2652:2658, 1/2A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_5VP2_271 | 1/2A/2680:2684, 1/2A/2725:2727 | C-loop | homologous IL_9DFE_103 IL_63596.11 | |
| IL_5VP2_272 | 1/2A/2687:2691, 1/2A/2718:2722 | UAA/GAN related, with intercalation | homologous IL_9DFE_104 IL_23774.1 | |
| IL_5VP2_273 | 1/2A/2695:2696, 1/2A/2711:2714 | No text annotation | homologous IL_9DFE_105 IL_42626.2 | |
| IL_5VP2_274 | 1/2A/2737:2742, 1/2A/2762:2767 | UAA/GAN with extra cWW | homologous IL_9DFE_106 IL_49767.8 | |
| IL_5VP2_275 | 1/2A/2838:2839, 1/2A/2878:2880 | Major groove intercalation | homologous IL_9DFE_107 IL_61258.15 | |
| IL_5VP2_359 | 1/2A/2843:2845, 1/2A/2871:2874 | Decoding loop related | homologous IL_7A0S_100 IL_31531.3 | |
| IL_5VP2_277 | 1/2A/2847:2852, 1/2A/2865:2869 | No text annotation | homologous IL_9DFE_109 IL_70411.2 | |
| IL_5VP2_278 | 1/2B/17:18, 1/2B/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.7 | |
| IL_5VP2_279 | 1/2B/23:28, 1/2B/56:60 | No text annotation | homologous IL_9DFE_111 IL_18472.4 | |
| IL_5VP2_373 | 1/2B/30:31, 1/2B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_68140.4 | |
| IL_5VP2_281 | 1/2B/34:38, 1/2B/44:48 | No text annotation | homologous IL_8C3A_147 NA | |
| IL_5VP2_282 | 1/2B/71:79, 1/2B/98:106 | Bacterial 5S Loop E | homologous IL_9DFE_114 IL_56455.6 | |
| IL_5VP2_284 | 1/2a/30:32, 1/2a/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_5VP2_285 | 1/2a/44:45, 1/2a/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_5VP2_286 | 1/2a/47:52, 1/2a/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_5VP2_287 | 1/2a/54:56, 1/2a/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.3 | |
| IL_5VP2_288 | 1/2a/63:66, 1/2a/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_5VP2_289 | 1/2a/67:69, 1/2a/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_5VP2_290 | 1/2a/129:131, 1/2a/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_5VP2_291 | 1/2a/132:136, 1/2a/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_5VP2_292 | 1/2a/148:153, 1/2a/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_5VP2_293 | 1/2a/186:188, 1/2a/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_5VP2_294 | 1/2a/242:247, 1/2a/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_5VP2_295 | 1/2a/249:252, 1/2a/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_5VP2_296 | 1/2a/292:293, 1/2a/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_5VP2_360 | 1/2a/367:369, 1/2a/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_5VP2_374 | 1/2a/371:375, 1/2a/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_5VP2_298 | 1/2a/375:376, 1/2a/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
| IL_5VP2_299 | 1/2a/409:416, 1/2a/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_5VP2_361 | 1/2a/446:450, 1/2a/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_5VP2_301 | 1/2a/450:455, 1/2a/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_5VP2_302 | 1/2a/504:511, 1/2a/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_5VP2_303 | 1/2a/515:521, 1/2a/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_5VP2_304 | 1/2a/569:575, 1/2a/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_5VP2_305 | 1/2a/580:584, 1/2a/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_5VP2_306 | 1/2a/594:596, 1/2a/644:645 | Major groove platform | homologous IL_6CZR_407 NA | |
| IL_5VP2_307 | 1/2a/597:598, 1/2a/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_5VP2_308 | 1/2a/605:612, 1/2a/628:633 | No text annotation | homologous IL_6CZR_408 NA | |
| IL_5VP2_309 | 1/2a/654:655, 1/2a/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_5VP2_310 | 1/2a/657:658, 1/2a/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_5VP2_311 | 1/2a/662:666, 1/2a/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_5VP2_312 | 1/2a/683:688, 1/2a/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_5VP2_313 | 1/2a/774:778, 1/2a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_5VP2_314 | 1/2a/779:783, 1/2a/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_5VP2_315 | 1/2a/887:894, 1/2a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_5VP2_316 | 1/2a/922:923, 1/2a/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_5VP2_317 | 1/2a/925:927, 1/2a/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_5VP2_375 | 1/2a/933:935, 1/2a/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_5VP2_319 | 1/2a/953:954, 1/2a/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_5VP2_362 | 1/2a/993:997, 1/2a/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_5VP2_321 | 1/2a/1048:1050, 1/2a/1208:1209 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_5VP2_323 | 1/2a/1052:1056, 1/2a/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_5VP2_324 | 1/2a/1057:1058, 1/2a/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_5VP2_327 | 1/2a/1124:1127, 1/2a/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_5VP2_328 | 1/2a/1129:1132, 1/2a/1142:1143 | Minor groove platform | homologous IL_4LFB_049 IL_15052.4 | |
| IL_5VP2_329 | 1/2a/1158:1161, 1/2a/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_5VP2_330 | 1/2a/1247:1253, 1/2a/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_5VP2_331 | 1/2a/1255:1258, 1/2a/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_5VP2_332 | 1/2a/1259:1264, 1/2a/1271:1276 | No text annotation | ||
| IL_5VP2_333 | 1/2a/1303:1308, 1/2a/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_5VP2_334 | 1/2a/1399:1401, 1/2a/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_5VP2_363 | 1/2a/1401:1404, 1/2a/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_5VP2_364 | 1/2a/1405:1407, 1/2a/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_5VP2_365 | 1/2a/1407:1409, 1/2a/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_5VP2_366 | 1/2a/1412:1414, 1/2a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_5VP2_338 | 1/2a/1416:1419, 1/2a/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_5VP2_339 | 1/2a/1431:1435, 1/2a/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_5VP2_340 | 1/2a/1435:1437, 1/2a/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_5VP2_341 | 1/2a/1440:1443, 1/2a/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5VP2_009 | No text annotation | ||
| IL_5VP2_026 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5VP2_085 | No text annotation | ||
| IL_5VP2_091 | No text annotation | ||
| IL_5VP2_098 | Isolated non-canonical cWW pair | ||
| IL_5VP2_111 | No text annotation | ||
| IL_5VP2_122 | tWH-tWH-tHW-tHW | ||
| IL_5VP2_347 | Tandem non-canonical cWW pairs | ||
| IL_5VP2_348 | No text annotation | ||
| IL_5VP2_128 | No text annotation | ||
| IL_5VP2_143 | No text annotation | ||
| IL_5VP2_154 | No text annotation | ||
| IL_5VP2_168 | No text annotation | ||
| IL_5VP2_169 | No text annotation | ||
| IL_5VP2_182 | No text annotation | ||
| IL_5VP2_371 | No text annotation | ||
| IL_5VP2_356 | Tandem non-canonical cWW pairs | ||
| IL_5VP2_357 | No text annotation | ||
| IL_5VP2_251 | Tandem non-canonical cWW pairs | ||
| IL_5VP2_267 | Isolated non-canonical cWW pair | ||
| IL_5VP2_276 | No text annotation | ||
| IL_5VP2_280 | No text annotation | ||
| IL_5VP2_283 | Stack and bulge | ||
| IL_5VP2_297 | No text annotation | ||
| IL_5VP2_300 | No text annotation | ||
| IL_5VP2_318 | No text annotation | ||
| IL_5VP2_320 | No text annotation | ||
| IL_5VP2_322 | No text annotation | ||
| IL_5VP2_325 | Single bulged U | ||
| IL_5VP2_326 | Isolated non-canonical cWW pair | ||
| IL_5VP2_335 | No text annotation | ||
| IL_5VP2_336 | No text annotation | ||
| IL_5VP2_337 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5VP2_001 | 1/1A/30:31, 1/1A/500:507, 1/1A/534:535 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_5VP2_053 | 1/1A/30:31, 1/1A/500:510, 1/1A/521:535 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_5VP2_054 | 1/1A/32:35, 1/1A/471:487, 1/1A/494:499 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_5VP2_002 | 1/1A/55:56, 1/1A/69:75, 1/1A/108:112 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_5VP2_003 | 1/1A/258:262, 1/1A/282:289, 1/1A/396:397 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_5VP2_055 | 1/1A/321:325, 1/1A/340:349, 1/1A/361:365 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_5VP2_004 | 1/1A/730:736, 1/1A/820:822, 1/1A/838:841 | No text annotation | homologous J3_9DFE_007 J3_64189.2 | |
| J3_5VP2_005 | 1/1A/745:747, 1/1A/779:783, 1/1A/807:810 | No text annotation | homologous J3_9DFE_008 J3_44724.7 | |
| J3_5VP2_074 | 1/1A/1101:1103, 1/1A/1127:1133, 1/1A/1148:1150 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_5VP2_007 | 1/1A/1344:1349, 1/1A/1671:1673, 1/1A/1686:1689 | No text annotation | homologous J3_9DFE_010 J3_32852.6 | |
| J3_5VP2_008 | 1/1A/1352:1355, 1/1A/1651:1657, 1/1A/1666:1668 | No text annotation | homologous J3_9DFE_011 J3_71677.1 | |
| J3_5VP2_009 | 1/1A/1390:1396, 1/1A/1427:1431, 1/1A/1448:1449 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_5VP2_056 | 1/1A/1470:1475, 1/1A/1611:1612, 1/1A/1615:1621 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_5VP2_010 | 1/1A/2113:2115, 1/1A/2218:2222, 1/1A/2235:2240 | No text annotation | homologous J3_9DFE_014 J3_89368.5 | |
| J3_5VP2_057 | 1/1A/2294:2296, 1/1A/2396:2407, 1/1A/2433:2439 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_5VP2_011 | 1/1A/2307:2309, 1/1A/2333:2335, 1/1A/2344:2349 | No text annotation | homologous J3_9DFE_016 J3_61124.2 | |
| J3_5VP2_012 | 1/1A/2529:2532, 1/1A/2557:2559, 1/1A/2573:2579 | No text annotation | homologous J3_9DFE_017 J3_32601.5 | |
| J3_5VP2_013 | 1/1A/2824:2825, 1/1A/2841:2846, 1/1A/2892:2896 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_5VP2_014 | 1/1B/11:16, 1/1B/68:69, 1/1B/108:110 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_5VP2_015 | 1/1a/46:47, 1/1a/361:367, 1/1a/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_5VP2_058 | 1/1a/46:52, 1/1a/359:367, 1/1a/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_5VP2_016 | 1/1a/586:588, 1/1a/651:654, 1/1a/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_5VP2_059 | 1/1a/586:588, 1/1a/651:655, 1/1a/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_5VP2_017 | 1/1a/672:673, 1/1a/717:725, 1/1a/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_5VP2_018 | 1/1a/826:829, 1/1a/857:861, 1/1a/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_5VP2_019 | 1/1a/936:939, 1/1a/1344:1350, 1/1a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_5VP2_020 | 1/1a/943:946, 1/1a/1235:1237, 1/1a/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_5VP2_021 | 1/1a/955:962, 1/1a/973:984, 1/1a/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_5VP2_022 | 1/1a/990:993, 1/1a/1045:1047, 1/1a/1210:1215 | No text annotation | geometric J3_5J7L_007 J3_82572.1 | |
| J3_5VP2_060 | 1/1a/990:997, 1/1a/1044:1047, 1/1a/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_5VP2_075 | 1/1a/1002:1006, 1/1a/1023:1028, 1/1a/1033:1038 | No text annotation | ||
| J3_5VP2_024 | 1/1a/1063:1068, 1/1a/1107:1113, 1/1a/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_5VP2_076 | 1/1a/1073:1074, 1/1a/1083:1086, 1/1a/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_5VP2_026 | 1/1a/1116:1118, 1/1a/1155:1158, 1/1a/1181:1184 | No text annotation | geometric J3_4LFB_008 J3_82365.4 | |
| J3_5VP2_061 | 1/1a/1116:1118, 1/1a/1155:1161, 1/1a/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_5VP2_027 | 1/1a/1237:1241, 1/1a/1296:1303, 1/1a/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_5VP2_028 | 1/2A/30:31, 1/2A/474:481, 1/2A/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_5VP2_062 | 1/2A/30:31, 1/2A/474:484, 1/2A/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_5VP2_063 | 1/2A/32:35, 1/2A/445:461, 1/2A/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_5VP2_029 | 1/2A/56:57, 1/2A/70:76, 1/2A/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_5VP2_030 | 1/2A/269:271B, 1/2A/271V:272B, 1/2A/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_5VP2_064 | 1/2A/297:301, 1/2A/316:325, 1/2A/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_5VP2_031 | 1/2A/683:689, 1/2A/773:775, 1/2A/791:794 | No text annotation | homologous J3_9DFE_007 J3_64189.2 | |
| J3_5VP2_032 | 1/2A/698:700, 1/2A/732:736, 1/2A/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_5VP2_033 | 1/2A/1298:1303, 1/2A/1625:1627, 1/2A/1639:1642 | No text annotation | homologous J3_9DFE_010 J3_32852.6 | |
| J3_5VP2_034 | 1/2A/1306:1309, 1/2A/1605:1611, 1/2A/1620:1622 | No text annotation | homologous J3_9DFE_011 J3_71677.1 | |
| J3_5VP2_035 | 1/2A/1344:1350, 1/2A/1381:1385, 1/2A/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_5VP2_065 | 1/2A/1424:1429, 1/2A/1564:1565, 1/2A/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_5VP2_036 | 1/2A/2091:2093, 1/2A/2196:2200, 1/2A/2223:2228 | No text annotation | homologous J3_9DFE_014 J3_89368.5 | |
| J3_5VP2_066 | 1/2A/2282:2284, 1/2A/2384:2395, 1/2A/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_5VP2_037 | 1/2A/2295:2297, 1/2A/2321:2323, 1/2A/2332:2337 | No text annotation | homologous J3_9DFE_016 J3_61124.2 | |
| J3_5VP2_038 | 1/2A/2517:2520, 1/2A/2545:2547, 1/2A/2561:2567 | No text annotation | homologous J3_9DFE_017 J3_32601.5 | |
| J3_5VP2_039 | 1/2A/2814:2815, 1/2A/2831:2836, 1/2A/2882:2886 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_5VP2_040 | 1/2B/11:16, 1/2B/68:69, 1/2B/108:110 | No text annotation | geometric J3_8VTW_047 NA | |
| J3_5VP2_068 | 1/2a/46:47, 1/2a/361:367, 1/2a/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_5VP2_069 | 1/2a/46:52, 1/2a/359:367, 1/2a/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_5VP2_042 | 1/2a/586:588, 1/2a/651:654, 1/2a/754:755 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_5VP2_070 | 1/2a/586:588, 1/2a/651:655, 1/2a/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_5VP2_077 | 1/2a/672:677, 1/2a/713:725, 1/2a/732:734 | No text annotation | ||
| J3_5VP2_043 | 1/2a/826:829, 1/2a/857:861, 1/2a/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_5VP2_044 | 1/2a/936:939, 1/2a/1344:1350, 1/2a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_5VP2_045 | 1/2a/943:946, 1/2a/1235:1237, 1/2a/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_5VP2_046 | 1/2a/955:962, 1/2a/973:984, 1/2a/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_5VP2_078 | 1/2a/990:993, 1/2a/1045:1047, 1/2a/1210:1215 | No text annotation | ||
| J3_5VP2_079 | 1/2a/990:997, 1/2a/1044:1047, 1/2a/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_5VP2_080 | 1/2a/1002:1006, 1/2a/1023:1027, 1/2a/1034:1038 | No text annotation | ||
| J3_5VP2_049 | 1/2a/1063:1068, 1/2a/1107:1113, 1/2a/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_5VP2_081 | 1/2a/1073:1074, 1/2a/1083:1086, 1/2a/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_5VP2_051 | 1/2a/1116:1118, 1/2a/1155:1158, 1/2a/1181:1184 | No text annotation | geometric J3_4LFB_008 J3_82365.4 | |
| J3_5VP2_073 | 1/2a/1116:1118, 1/2a/1155:1161, 1/2a/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_5VP2_052 | 1/2a/1237:1241, 1/2a/1296:1303, 1/2a/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_5VP2_001 | 1/1A/257:258, 1/1A/397:402, 1/1A/426:433, 1/1A/448:451 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_5VP2_002 | 1/1A/321:325, 1/1A/340:343, 1/1A/347:349, 1/1A/361:365 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_5VP2_003 | 1/1A/1316:1322, 1/1A/1340:1341, 1/1A/1692:1695, 1/1A/2031:2032 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_5VP2_004 | 1/1A/1356:1360, 1/1A/1384:1389, 1/1A/1450:1451, 1/1A/1643:1650 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_5VP2_005 | 1/1A/1359:1360, 1/1A/1384:1389, 1/1A/1450:1451, 1/1A/1643:1649 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_5VP2_006 | 1/1A/1490:1492, 1/1A/1513:1514, 1/1A/1571:1572, 1/1A/1593:1594 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_5VP2_007 | 1/1A/1803:1807, 1/1A/1819:1823, 1/1A/1858:1861, 1/1A/1997:2001 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_5VP2_008 | 1/1A/1864:1866, 1/1A/1927:1928, 1/1A/1946:1955, 1/1A/1989:1994 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_5VP2_009 | 1/1A/2297:2301, 1/1A/2355:2359, 1/1A/2382:2384, 1/1A/2393:2395 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_5VP2_010 | 1/1A/2655:2658, 1/1A/2686:2688, 1/1A/2744:2748, 1/1A/2782:2784 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_5VP2_011 | 1/1a/115:122, 1/1a/239:240, 1/1a/286:289, 1/1a/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_5VP2_033 | 1/1a/142:144, 1/1a/178:183, 1/1a/194:198, 1/1a/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5VP2_013 | 1/1a/575:577, 1/1a/764:769, 1/1a/810:821, 1/1a/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_5VP2_014 | 1/1w/7:10, 1/1w/25:27, 1/1w/43:49, 1/1w/65:66 | tRNA junction | homologous J4_3TUP_001 J4_70449.29 | |
| J4_5VP2_015 | 1/1x/7:10, 1/1x/25:27, 1/1x/43:49, 1/1x/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_70449.29 | |
| J4_5VP2_016 | 1/1y/7:10, 1/1y/25:27, 1/1y/43:49, 1/1y/65:66 | No text annotation | homologous J4_4WT8_031 NA | |
| J4_5VP2_017 | 1/2A/268:269, 1/2A/370:375, 1/2A/399:406, 1/2A/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_5VP2_018 | 1/2A/297:301, 1/2A/316:319, 1/2A/323:325, 1/2A/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_5VP2_019 | 1/2A/1270:1276, 1/2A/1294:1295, 1/2A/1645:1648, 1/2A/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_5VP2_020 | 1/2A/1310:1314, 1/2A/1338:1343, 1/2A/1404:1405, 1/2A/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_5VP2_021 | 1/2A/1313:1314, 1/2A/1338:1343, 1/2A/1404:1405, 1/2A/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_5VP2_022 | 1/2A/1444:1445, 1/2A/1466:1467, 1/2A/1525:1526, 1/2A/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_5VP2_023 | 1/2A/1772:1776, 1/2A/1788:1792, 1/2A/1827:1830, 1/2A/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_5VP2_024 | 1/2A/1833:1835, 1/2A/1905:1906, 1/2A/1924:1933, 1/2A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_5VP2_025 | 1/2A/2285:2289, 1/2A/2343:2347, 1/2A/2370:2372, 1/2A/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_5VP2_026 | 1/2A/2643:2646, 1/2A/2674:2676, 1/2A/2731:2735, 1/2A/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_5VP2_027 | 1/2a/115:122, 1/2a/239:240, 1/2a/286:289, 1/2a/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_5VP2_028 | 1/2a/142:144, 1/2a/178:183, 1/2a/194:198, 1/2a/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5VP2_029 | 1/2a/575:577, 1/2a/764:769, 1/2a/810:821, 1/2a/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_5VP2_030 | 1/2w/7:10, 1/2w/25:27, 1/2w/43:50, 1/2w/64:66 | No text annotation | ||
| J4_5VP2_031 | 1/2x/7:10, 1/2x/25:27, 1/2x/43:49, 1/2x/65:66 | tRNA junction | homologous J4_4WT8_034 J4_70449.29 | |
| J4_5VP2_032 | 1/2y/7:10, 1/2y/25:27, 1/2y/43:49, 1/2y/65:66 | No text annotation | homologous J4_4WT8_031 NA | |
| J5_5VP2_001 | 1/1A/46:53, 1/1A/114:119, 1/1A/128:129, 1/1A/148:150, 1/1A/165:167 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_5VP2_002 | 1/1A/257:262, 1/1A/282:289, 1/1A/396:402, 1/1A/426:433, 1/1A/448:451 | No text annotation | ||
| J5_5VP2_003 | 1/1A/556:558, 1/1A/583:587, 1/1A/600:602, 1/1A/1307:1308, 1/1A/2039:2040 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_5VP2_004 | 1/1A/607:612, 1/1A/715:718, 1/1A/856:859, 1/1A/1240:1241, 1/1A/1296:1302 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_5VP2_005 | 1/1A/1721:1729, 1/1A/1753:1754, 1/1A/1782:1783, 1/1A/1787:1795, 1/1A/2010:2012 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_5VP2_006 | 1/1A/2079:2086, 1/1A/2458:2465, 1/1A/2512:2518, 1/1A/2595:2600, 1/1A/2618:2623 | No text annotation | ||
| J5_5VP2_007 | 1/1A/2096:2099, 1/1A/2255:2258, 1/1A/2270:2271, 1/1A/2293:2294, 1/1A/2439:2447 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_5VP2_020 | 1/1a/36:39, 1/1a/403:406, 1/1a/436:442, 1/1a/492:500, 1/1a/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_5VP2_009 | 1/1a/58:61, 1/1a/106:113, 1/1a/314:316, 1/1a/337:339, 1/1a/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_5VP2_010 | 1/2A/47:54, 1/2A/116:121, 1/2A/130:131, 1/2A/148:150, 1/2A/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_5VP2_011 | 1/2A/268:271, 1/2A/271:272, 1/2A/366:375, 1/2A/399:406, 1/2A/421:424 | No text annotation | ||
| J5_5VP2_012 | 1/2A/531:533, 1/2A/560:564, 1/2A/577:579, 1/2A/1261:1262, 1/2A/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_5VP2_013 | 1/2A/584:589, 1/2A/668:671, 1/2A/809:812, 1/2A/1195:1196, 1/2A/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_5VP2_014 | 1/2A/601:604, 1/2A/624:628, 1/2A/635:638, 1/2A/650:652, 1/2A/652:656 | No text annotation | ||
| J5_5VP2_015 | 1/2A/1674:1682, 1/2A/1706:1707, 1/2A/1751:1752, 1/2A/1756:1764, 1/2A/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_5VP2_016 | 1/2A/2057:2064, 1/2A/2446:2453, 1/2A/2500:2507, 1/2A/2582:2588, 1/2A/2606:2611 | No text annotation | ||
| J5_5VP2_017 | 1/2A/2074:2077, 1/2A/2243:2246, 1/2A/2258:2259, 1/2A/2281:2282, 1/2A/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_5VP2_018 | 1/2a/36:39, 1/2a/403:406, 1/2a/436:442, 1/2a/492:500, 1/2a/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_5VP2_019 | 1/2a/58:61, 1/2a/106:113, 1/2a/314:316, 1/2a/337:339, 1/2a/350:354 | No text annotation | homologous J5_6CZR_021 NA | |
| J6_5VP2_001 | 1/1A/44:45, 1/1A/168:172, 1/1A/203:213, 1/1A/220:224, 1/1A/251:255, 1/1A/453:460 | No text annotation | ||
| J6_5VP2_002 | 1/1A/2096:2099, 1/1A/2255:2258, 1/1A/2270:2271, 1/1A/2293:2296, 1/1A/2396:2407, 1/1A/2433:2447 | No text annotation | ||
| J6_5VP2_003 | 1/2A/44:45, 1/2A/179:183, 1/2A/214:224, 1/2A/231:235, 1/2A/262:266, 1/2A/426:433 | No text annotation | ||
| J6_5VP2_004 | 1/2A/2074:2077, 1/2A/2243:2246, 1/2A/2258:2259, 1/2A/2281:2284, 1/2A/2384:2395, 1/2A/2421:2435 | No text annotation | ||
| J7_5VP2_001 | 1/1A/864:869, 1/1A/882:883, 1/1A/988:991, 1/1A/1016:1022, 1/1A/1033:1037, 1/1A/1209:1210, 1/1A/1230:1235 | No text annotation | ||
| J7_5VP2_002 | 1/2A/817:822, 1/2A/835:836, 1/2A/943:946, 1/2A/971:976, 1/2A/987:991, 1/2A/1163:1164, 1/2A/1185:1190 | No text annotation | ||
| J8_5VP2_001 | 1/1A/8:15, 1/1A/550:556, 1/1A/2040:2045, 1/1A/2062:2065, 1/1A/2637:2642, 1/1A/2801:2804, 1/1A/2816:2821, 1/1A/2899:2904 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5VP2_006 | No text annotation | ||
| J3_5VP2_023 | No text annotation | ||
| J3_5VP2_025 | No text annotation | ||
| J3_5VP2_067 | No text annotation | ||
| J3_5VP2_041 | No text annotation | ||
| J3_5VP2_071 | No text annotation | ||
| J3_5VP2_047 | No text annotation | ||
| J3_5VP2_072 | No text annotation | ||
| J3_5VP2_048 | No text annotation | ||
| J3_5VP2_050 | No text annotation | ||
| J4_5VP2_012 | No text annotation | ||
| J5_5VP2_008 | No text annotation |
Coloring options: