HL_5VP2_023

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

5VP2|1|1A|A|828, 5VP2|1|1A|A|831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VP2_023 not in the Motif Atlas

Homologous match to HL_9DFE_022

Geometric discrepancy: 0.0567

The information below is about HL_9DFE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

5VP2|1|1A|U|826
5VP2|1|1A|G|827
5VP2|1|1A|A|828
5VP2|1|1A|A|829
5VP2|1|1A|A|830
5VP2|1|1A|A|831
5VP2|1|1A|G|832

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2