HL_5VP2_025

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

5VP2|1|1A|C|935, 5VP2|1|1A|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VP2|1|1A|G|929
5VP2|1|1A|G|930
5VP2|1|1A|C|931
5VP2|1|1A|C|932
5VP2|1|1A|C|933
5VP2|1|1A|A|934
5VP2|1|1A|C|935
5VP2|1|1A|C|936
5VP2|1|1A|A|937
5VP2|1|1A|G|938
5VP2|1|1A|C|939
5VP2|1|1A|C|940

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1w

Transfer RNA; tRNA