HL_5VP2_028

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGGCUUAGAAGCAGCCAUC

Length

20 nucleotides

Bulged bases

5VP2|1|1A|A|1113, 5VP2|1|1A|A|1116

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VP2|1|1A|G|1105
5VP2|1|1A|U|1106
5VP2|1|1A|G|1108
5VP2|1|1A|G|1109
5VP2|1|1A|C|1110
5VP2|1|1A|U|1111
5VP2|1|1A|U|1112
5VP2|1|1A|A|1113
5VP2|1|1A|G|1114
5VP2|1|1A|A|1115
5VP2|1|1A|A|1116
5VP2|1|1A|G|1117
5VP2|1|1A|C|1118
5VP2|1|1A|A|1119
5VP2|1|1A|G|1120
5VP2|1|1A|C|1121
5VP2|1|1A|C|1122
5VP2|1|1A|A|1123
5VP2|1|1A|U|1124
5VP2|1|1A|C|1125

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains