HL_5VP2_058
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUGUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5VP2|1|1A|U|2418
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VP2_058 not in the Motif Atlas
- Homologous match to HL_9DFE_057
- Geometric discrepancy: 0.0827
- The information below is about HL_9DFE_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51853.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5VP2|1|1A|C|2416
5VP2|1|1A|G|2417
5VP2|1|1A|U|2418
5VP2|1|1A|G|2419
5VP2|1|1A|U|2420
5VP2|1|1A|G|2421
5VP2|1|1A|G|2422
5VP2|1|1A|A|2423
5VP2|1|1A|A|2424
5VP2|1|1A|G|2425
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1P
- 50S ribosomal protein L15
Coloring options: