HL_5VP2_065
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 5VP2|1|1A|G|2764, 5VP2|1|1A|C|2768
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VP2_065 not in the Motif Atlas
- Homologous match to HL_9DFE_064
- Geometric discrepancy: 0.0698
- The information below is about HL_9DFE_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 10
Unit IDs
5VP2|1|1A|C|2758
5VP2|1|1A|U|2759
5VP2|1|1A|G|2760
5VP2|1|1A|A|2761
5VP2|1|1A|A|2762
5VP2|1|1A|A|2763
5VP2|1|1A|G|2764
5VP2|1|1A|C|2765
5VP2|1|1A|A|2766
5VP2|1|1A|U|2767
5VP2|1|1A|C|2768
5VP2|1|1A|U|2769
5VP2|1|1A|A|2770
5VP2|1|1A|A|2771
5VP2|1|1A|G|2772
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
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