HL_5VP2_145

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5VP2|1|2A|U|1396, 5VP2|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VP2_145 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1135

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5VP2|1|2A|G|1389
5VP2|1|2A|U|1390
5VP2|1|2A|U|1391
5VP2|1|2A|A|1392
5VP2|1|2A|A|1393
5VP2|1|2A|U|1394
5VP2|1|2A|A|1395
5VP2|1|2A|U|1396
5VP2|1|2A|U|1397
5VP2|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23