HL_5VP2_150

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5VP2|1|2A|A|1614, 5VP2|1|2A|A|1616, 5VP2|1|2A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VP2_150 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0841

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5VP2|1|2A|C|1612
5VP2|1|2A|G|1613
5VP2|1|2A|A|1614
5VP2|1|2A|C|1615
5VP2|1|2A|A|1616
5VP2|1|2A|C|1617
5VP2|1|2A|A|1618
5VP2|1|2A|G|1619

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2W

50S ribosomal protein L22