HL_5VP2_160

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5VP2|1|2A|A|2030, 5VP2|1|2A|A|2031, 5VP2|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VP2_160 not in the Motif Atlas

Homologous match to HL_9DFE_048

Geometric discrepancy: 0.0867

The information below is about HL_9DFE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5VP2|1|2A|G|2027
5VP2|1|2A|U|2028
5VP2|1|2A|G|2029
5VP2|1|2A|A|2030
5VP2|1|2A|A|2031
5VP2|1|2A|G|2032
5VP2|1|2A|A|2033
5VP2|1|2A|U|2034
5VP2|1|2A|G|2035
5VP2|1|2A|C|2036

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3