HL_5VP2_176

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5VP2|1|2A|G|2751, 5VP2|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VP2_176 not in the Motif Atlas

Homologous match to HL_9DFE_064

Geometric discrepancy: 0.1962

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

5VP2|1|2A|C|2745
5VP2|1|2A|U|2746
5VP2|1|2A|G|2747
5VP2|1|2A|A|2748
5VP2|1|2A|A|2749
5VP2|1|2A|A|2750
5VP2|1|2A|G|2751
5VP2|1|2A|C|2752
5VP2|1|2A|A|2753
5VP2|1|2A|U|2754
5VP2|1|2A|C|2755
5VP2|1|2A|U|2756
5VP2|1|2A|A|2757
5VP2|1|2A|A|2758
5VP2|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6