HL_5VPO_025

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5VPO|1|QA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.095

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

5VPO|1|QA|G|1089
5VPO|1|QA|U|1090
5VPO|1|QA|U|1091
5VPO|1|QA|A|1092
5VPO|1|QA|A|1093
5VPO|1|QA|G|1094
5VPO|1|QA|U|1095
5VPO|1|QA|C|1096

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QG

30S ribosomal protein S7