HL_5VPO_033
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- UUCGG(1MG)GA
- Length
- 8 nucleotides
- Bulged bases
- 5VPO|1|QV|U|33, 5VPO|1|QV|G|38
- QA status
- Modified nucleotides: 1MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VPO_033 not in the Motif Atlas
- Geometric match to HL_5VPO_138
- Geometric discrepancy: 0.0263
- The information below is about HL_5VPO_138
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
5VPO|1|QV|U|32
5VPO|1|QV|U|33
5VPO|1|QV|C|34
5VPO|1|QV|G|35
5VPO|1|QV|G|36
5VPO|1|QV|1MG|37
5VPO|1|QV|G|38
5VPO|1|QV|A|39
Current chains
- Chain QV
- P-site ASL SufA6
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QI
- 30S ribosomal protein S9
- Chain QM
- 30S ribosomal protein S13
- Chain QX
- messenger RNA
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
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